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Domain assignment for Tc00_g056601 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g056601
Domain Number 1 Region: 546-690
Classification Level Classification E-value
Superfamily Ribonuclease H-like 6.83e-35
Family Retroviral integrase, catalytic domain 0.0081
Further Details:      
 
Domain Number 2 Region: 918-1298
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.2e-18
Family Reverse transcriptase 0.025
Further Details:      
 
Domain Number 3 Region: 200-229
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000349
Family Retrovirus zinc finger-like domains 0.0051
Further Details:      
 
Weak hits

Sequence:  Tc00_g056601
Domain Number - Region: 286-327
Classification Level Classification E-value
Superfamily Fzo-like conserved region 0.0497
Family Fzo-like conserved region 0.0064
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Tc00_g056601
Sequence length 1350
Comment Putative Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence
MSIYIKATDYEMWDVITDGPFMPLTINVVTNELMPNCTTAKQVWEKLRIIHERTSQVKES
KIALLTHNYEMFKMEPGENITSMFNRFTNITNKLSQPGVYQKNLKPKVTAIREAKDLNII
TLDEICGSLLTHELELKEEKEEDQREAKEKKRSIALKANILEEGLEELSCDDDEELALVA
RKFRKRVQGASWKNKNKIDSNKKEELICYKCKKPSHFKSECPLLKDDTPKKNKKSKKAMV
AVAWSKSDTSSSEVEDEKSKERANICLMAKDDETEVSSSPCNNSFDDLQNEYECLYDEFE
KLFSKYKSLKKKAALLENDLDQIKQEFTSVFEQRNILQIELENSKTDFEVLKQKLENNSE
ALQITLDENTALKSLKNEFPKRDVYKKKDSANASQDVELDLKEVCSRAQLKKKQPWYMDS
GCSRHMIGHKMLFAQLDKRKGGTVSFRDDSKGRIHGIGTVGKNYQTQISHVLLVKGLKHN
LLSISQLCDKGFKVCFDSTKCEVIDMSTNEISFIGKRLKNMYVVFLEDLEVNSEVCLVAN
SKKIVSTSRPLELLHIELFGPISTTSLGEKSYGFVIVDDYSRYTWVYFLAHKNYALSAFL
ISIRSDHGGEFENDEFEKFCNEKGLDHNFSTPRTPQQNGVVERKNRTLKEMARTMLCDNN
LPKYLWAEVVNTTTYLISKTPYELYKGRKPNISHLRSFGCKCFVLNNGKQPLGKFDAKSD
EAIFLGYALNSKAYSVFNKRTLTVEESIHVVFDESNGLQKEVHDDDDDVKVLEKQIEEMS
LENNKNNEESSPRRENETPPLENLQIAENQETCEFSAFISQIESKNFEEAEKEESWIMAM
QEKLDQFTRSRVWSLVPRPANHPIVGTKWVFRNKVDEQGNVFRNKVDEQGNVFRNKVGEQ
GNVFRNKVDEQRNVFRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAFACFMNFK
LFQMDVKSAFLNGLIQEEVYVEQPPSFEDFEKSDHVFKLHKAFYGLKQAPRAWYERLSKF
LVEKGYDRGCIDTTLFIKRYLNDLIVVQIYVDDIVFGATSEALCKNFAKEMQGEFKMSMM
GELRNFLGLQIKQSEEGIFIIQERYTQDMLKKFDMLKLKSISTPMNQKLYRGMIDFLLYL
ITSRPDIQFNVCLCARFQSQPKETHLTVVKRIFRYHINTQGLGIWYSRDSTLSLVGYSDV
DFADSRTDRKSTSGTCQFLGSMLVSWSNKKQNSVALSVAKAEYVSLGSCCAQILWIKQQL
KDYGITMHNVPIYCDNTSAINISKNPMQHSRTKHIEIRHHFIRDHVVKNDIKIEFVNTLH
QLANIFTKPLNEDRFCEIRRNLGMITMKEL
Download sequence
Identical sequences Tc00_g056601

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