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Domain assignment for Tc00_g068541 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g068541
Domain Number 1 Region: 65-249,279-363
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.00000000000187
Family Reverse transcriptase 0.027
Further Details:      
 
Weak hits

Sequence:  Tc00_g068541
Domain Number - Region: 5-49
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.000146
Family Retroviral integrase, catalytic domain 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Tc00_g068541
Sequence length 371
Comment Putative Copia protein
Sequence
MARTMLCENNLPKYFWAEVVNTVAYILNRVSIRPMISKTPYELYKGRKPNISHLRSFEEL
DQFRRNKVWSLVPRPSNHPIVGTKWVFRNKVDEKGNVVRNKARLVAQGYNQEERIDNDET
FTPVARIEAIRLLLAFAYHVFKLHKALYGLKQAPRAWYERLSKFLVEKGYVRGSIDTTLF
IKRYLKDLIVVQIYVDDIVFGATNEALCKNFAKKMQGEFEMSMMGELKYFLGLQIKQSEE
GIFINQERYTQDMLKKFDMLKLKLISTPMSPSTKLDLDEKGKNVDQKLYRGMIGSLLYLT
ASRQDIQFSVCLCAKFQSQPKESHLTTVKRIFRYLLETQTLGLWYSRESTLSLVGYSDAD
FTGSKTNQKTG
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Identical sequences Tc00_g068541

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