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Domain assignment for Tc00_g080503 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g080503
Domain Number 1 Region: 7-395
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 7.56e-132
Family Reverse transcriptase 0.00019
Further Details:      
 
Domain Number 2 Region: 552-625
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.000000000455
Family mu transposase, core domain 0.034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc00_g080503
Sequence length 626
Comment Putative Transposon Ty3-I Gag-Pol polyprotein
Sequence
MLGNVPVVSEFLDVFLDELPGLPPDREFEFTIDLISSIVPISIPPYRMAPAELKELKVQL
QELVDKGFIRPSISPSGLNKMTIKNKYPLPRIDDFFDQLQGAIVFSKVDQRFGYHQLRIK
EQDVPKTAFRTRYGHYEFLVMPFGLTNAPTAFMDLMNRVFHPYLDKFVIVFIDDILVYSR
DNDEYATHLRIVLQTLRERQLYAKFSKCEFWLQEVVFLGHVVSGARIYVDPKKIEAILQW
EQPKTVTEICSFLGLAGYYRVKFEWDDVCENRFQELKNWLTSASVLTLPVNGKGFVVYSD
ASKLGLGCVLIQDEKVVAYASRQLKRHEANYPTHDLKLAAVVFALKIWRHYLYSEHCRVF
TDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKANVVADALSRKSSSSLAALQS
CYFPALLEMKSLGVQLRNGEDGSLLTRFIVKEIQKLAYGGVSEFKFGKDNVLMFRDQVCV
PEGNQLRQVIMEEAHSSAYALHPGSTKMYRTIRENYWWPVMKRDVAKFVAKCLVCQQVKA
EHQRPAGTLQSLPIPKWKWEHVTMDFVLGLPQTQKGNDAIWVIVDRLTKSAHFLAVHSTY
SIEKLAQLYIDEIVRLHGVPVSIVSN
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Identical sequences Tc00_g080503

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