SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Tc00_g081471 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  Tc00_g081471
Domain Number - Region: 31-119
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.0138
Family Reverse transcriptase 0.043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Tc00_g081471
Sequence length 140
Comment Putative Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence
MDKPGNEHLMATYRVLRYLKIAKCLGTCRFVSSFNVFIGDSLVSWKSKKQSVVASSSIEA
KYRSMASVYCEIIWLQYLLVDFEINHDAIVRLYCDNQSAIYICKNLIFYERTKHIEMNYY
FIQDKVLARTIEPKHISIDF
Download sequence
Identical sequences Tc00_g081471

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]