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Domain assignment for Tc00_g093350 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g093350
Domain Number 1 Region: 311-669
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.78e-129
Family Reverse transcriptase 0.0000825
Further Details:      
 
Domain Number 2 Region: 147-245
Classification Level Classification E-value
Superfamily Acid proteases 0.000000107
Family Retroviral protease (retropepsin) 0.035
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc00_g093350
Sequence length 670
Comment Putative retrotransposon protein, identical
Sequence
MSVNRDVAAVVMGPREVPSILLMSLRLTVLRHGLTSSKNLMDQANYFEEGLRNEIRERMT
VTGREPHKEVVQMALRVEKLATENRWIRAEFAKRRNPPTFPSQSSKRGIDSTSVARSTTS
TSVPQILTRVFVVTENEARVRPSTVTGTMIVFDRDTHVLVDSGSDRSYVSISFALFSNRN
LSPLEEEIVVHTPLGEWLVRNTYYRDCGIKVGEEEFMGDLIPLEIRDFDLILGMDWLSTH
QAKVDCFKKEVILQSLEGAEVVYTGEHRILPYCVISALKALKVVRKRYPTYLAHVIDISR
EEPKLENVLVVSEFPDVFLDELPGLPPDHEFEFTIDLHPGIAPISIPPYTMALVELKELK
VQLKELADKGFIRPSTSLWGAPILFVKKKDDTLQLCIDYRQLNKMTIKNKYPLPRIDDLF
DQLQGATVFSMVDLRSRYHQLRIKEQDVPKTAFRTRYDHYEFLVMPFELTNPPAAFMDLM
NRVFHPYLDKFVIVFIDDILVYSRDNDEHAAHLRIVLQALRERQLYAKFLKCEFWLQEVA
FLGHVVSGVGIYVDPKKIEAILQWEQPKTVTEIRSFLGLAGYYRRFVQGFSLIAALLELK
NRLTSAPVLTLPVNGKGFVAYSDASKLGLGCVLMQDEKVIAYASRQLKRHEANYPTHDLE
LAAVVFALKI
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Identical sequences Tc00_g093350

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