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Domain assignment for Tc00_g094480 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g094480
Domain Number 1 Region: 240-380
Classification Level Classification E-value
Superfamily Ribonuclease H-like 4.4e-28
Family Retroviral integrase, catalytic domain 0.015
Further Details:      
 
Weak hits

Sequence:  Tc00_g094480
Domain Number - Region: 39-79
Classification Level Classification E-value
Superfamily Inorganic pyrophosphatase 0.0131
Family Inorganic pyrophosphatase 0.0099
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Tc00_g094480
Sequence length 741
Comment Putative Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence
DAAWSDSDTSSSETDDEKSEKKVNIYLMAYEDETEVPSSPCINSYDDLQDEYECLYDEFE
NLFSKYKSLKKKPWYLDSGCSRQMTRHEMLFAQLDKRKKGTVSFGDDSKRRIHGIGTVGK
NSQTQISHVLLVKGLKHNLLSISQLCDKRFRVCFDSTKCEVIDMNIKVNSEVCLVANAEN
DSWLWHRRLEHVSMNTMSKLIKKNLVAGLPELKFENDRICDACQLGKQVRTSLKSKKIVS
TSRPLELLHIDLFGPISITSLGGKSYGFVIVNDYSRYTWVYFLAHKNDALQAFLSHCKKV
ENEKTLAIVSIRSDHGGEFENDEFEKFFVERKNRTLKEMAKTMLCENNLPKYLWVEAVNT
TVYILNRVSIRPLISKTPYELYKGRKPNISHPWSFGCKSLNSKAYRAFNKRTLTIEESIH
VAFDELNALQKEVHDDDDDVGVLEKQMEEMSLENNKNNEESSPKREDETPPLENLQRVEN
QHGDLLRSWRFLRDHPQDQIIGEISQGVKTRKATRETCEFSESWIIAIQEELDQFTRNHV
WSLVPRPSNHPIVGTKWVFRNKVDEQENVVRNKTRLVAKGYNQEEGIDYDETFTPVARIE
AIRLLLAFEVYVEQPPGFEDFEKSDHVYKLHKALYGLKQALRAWYERLSKFLVKKGMIEG
EFEMSMMGELKYFLGLQIKQSEEGIFINQERYTHDMLKKFDMLKLKSISTPMSPSTKLDL
DEKGKNVDQKLYRGMIDSLLY
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Identical sequences Tc00_g094480

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