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Domain assignment for Tc00_g095120 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g095120
Domain Number 1 Region: 364-718
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.56e-128
Family Reverse transcriptase 0.0000985
Further Details:      
 
Domain Number 2 Region: 794-916
Classification Level Classification E-value
Superfamily Ribonuclease H-like 6.07e-24
Family Retroviral integrase, catalytic domain 0.037
Further Details:      
 
Weak hits

Sequence:  Tc00_g095120
Domain Number - Region: 209-299
Classification Level Classification E-value
Superfamily Acid proteases 0.00112
Family Retroviral protease (retropepsin) 0.044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc00_g095120
Sequence length 970
Comment Retrotransposon protein, putative, Ty3-gypsy subclass
Sequence
GCVSFTGELDATVAKDWINQVSETLSDMGLDDDMKLMVATRLLEKRGNLTVEEYETRFNE
LMSYVPDLVKSEQDQASYFEEGLRNEIRERMTVTGREPHKEVVQMSLRAEKLVIENMRIQ
TEFAKKRNPGMSSSQPVKRGKDSVISGNSFGLPPRQGVAIRSGVESNTPEHPPSRPQTRT
STRVFAVTEDEAQVRPGAVTGIMSLFDKDAYVLIDFGSDRSYLSMTFASIADRNLSPLEG
EIVVHTPLGEQLIKNTCYRDCGVRVGEEEFRGDLIPLEILDFDLILGMDWLTVHRANVDC
FQKEFVLRNSEGAKIVFVGERRVLPPCVISAIKASKLVQKGYPAYLAYVIDTSKGEPKLE
DVPIVSEFPDVFPDDLPGLPPDRELEFPTDLLSGTLQDLVDKGFIRPSISPWGAPVLFVK
KKDGTLRLYIDYRQPNRVTIKNKYPLPWIDDLFDQLRGAMVFSKIDLRSRYYQLRITEQD
VPKTAFRTRYGHYEFLVMPFGLTNAPTVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDD
EHAVHLRIVLQTLCERKLYAILQWEQPRTVTEIRSFLGFVDYYQRFVQGFSLIAAPLTHL
TCKGVKYEWDDICENRFQEVKNRLTSAPVLTLPVNGKEFVVYSDASKLGLGCVLMQDEKV
IAYASRQLKKHETNYPTHDLELVAVVFALKIWRHYLYGEHCRIFIDHKSLTYLLTQKEKV
NVVADALSRKSSSSLEAHSFTYALHLGSTKMYQTIKESYWWLGMKRDIAKFIAKCLTCQQ
IKAEHQKSSSTLQPLPIPEWKWEQVTMDFVLGLPQTQSGKYAIWAIVDRLTKSAHFLAIH
STYYIERLEALGTKLRFSTAFHPQTDGQSERTIQTLEDMLWAYVIDFIGSWDRHLPLVEF
AYNNSFQSSIRMAPYDALYGRKCRTLLCWDEVGERKLVNVELIDLTNDKVKVILERLKTA
QDRQKNYSDK
Download sequence
Identical sequences Tc00_g095120

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