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Domain assignment for Tc01_g028570 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc01_g028570
Domain Number 1 Region: 716-1037
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.78e-88
Family Reverse transcriptase 0.0031
Further Details:      
 
Domain Number 2 Region: 1242-1398
Classification Level Classification E-value
Superfamily Ribonuclease H-like 4.68e-35
Family Retroviral integrase, catalytic domain 0.0035
Further Details:      
 
Domain Number 3 Region: 1086-1192
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.77e-18
Family Ribonuclease H 0.0093
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Tc01_g028570
Sequence length 1464
Comment Hypothetical protein
Sequence
MDATELCLVPDVLISTKFKVPEFEKYDRTKCPMAHITMYCRKMATHNFNPYYPYPPYQPF
YLNIGNIAQNPYVYQPAPQPTFQTTILPQAPPPRPVASTNNSGNGQRGHKTIPEKPKFDP
ILILYTRLLPQLIKNRLLARTPLEPRRPPFSKWYDSNAHYDYHFGIQGHSTENCTALKHK
VQALIKTRLLNFAKKDNSNVDGNPLPNHGSSTVNAIHEKKIQRVKRNFDEIQMLMDKVFE
TLFKINAITPEPIDIKELGHDFTHSRKFHMGVIGHSIQNCDSFRCKLQELMDLSVIEFYE
EGEEDLVETINEDTLVEVASSSSEVNKPKSLTIFYEENRSPTNDTPLLLSKVASLLKFLA
RSSTRVRSVVEQLTRMPARISLLSLLLNLKAHRNALLKVLNQAYVAHDISVEKLDHMVEN
ITVGNFIAFNDEEIPSGGRGSNKALHITIQCKDHAVPKVLIDNGSALKVMPRFTLTKLPV
DLSYMRTSHMVVRAFDGTIREVVEDIELPIKIGCPWIHMAGAIPSSLHQKVKLIVEGQLI
SVSAKEDILAIQPSSAPHVEATEEIPECSFRSFEFVNNEERFGLGYKPTKEEKRKLTAQK
KIKRMAQLEGKEEEFGKQTIPYLYETFRSAGFIHPKTPTKVNQVLSLNDEHEDNLDNDLN
IDFEMISNVDELKTEEEVDDCGLPPDLSKMLEQEEREILSHQELTEMINLENGEVKKEVK
IEEVKKQFDAGFLEVAKYLEWVANMVPIPKKDGKVRMCVDYRDLNRASPKDSFPLPHIDT
LVDNTAKHALFSFIDDFSGYNQIKMAPINMEKTTFVTMWGTFCYKVMPFGLKNAGATYQR
AMVALFHDMMHKEIEVYVDDMIAKSHTERDHTINLKKLFERLRKFQLKLNHAKCTFGVTF
GKLLGFIVSEKEIEVDLDKIRAIQELEWNEECQIAFDKIKEYLTNPPVLVPLTTEKSLIL
YLTVNKNSMGCVLGQHDGTGKKEQAIYYLSKKFTEYESKYSTLEKMYCALYIFENPFLFG
RIARWKVLLSEYDIVYVSQKSIKGSAIANFLANRANEDYESVSFDFSDEDLMVVLHIEKD
SPNELNPWKMYFDGASNALGHKIGAVLISPNEKYYPATVRLNFNCTNNIAEYEALVMGLQ
AAIEMKVSAIEVYGDSALVICQMRGEWETRHFKLVPYKKLVTELSKQFKEITMGFFLSGE
VLYKRSRDQVLLRCVNVTEANKIMKEVHEGTCGAHANGHMLPFSMWGIDVIGLITPKASN
GHRFILVTIDYFTKWVKAASYANVTQKVVCRFIQREIICRYGLLEMIITDNARNLNGAMV
KEVCVKFKIKHHNSTTYRPKMNGAVEAANKNIKTIIKKMTEVYKDWHEKLPFALHAYQTS
VRTSTGATPYSLVYGIEWVCSRYEQLNLIEEKRLAALCHGQMYQRRMMRAYEKKVHPRQF
REGELVLKRILPNQIDFRRKWMSN
Download sequence
Identical sequences Tc01_g028570

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