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Domain assignment for Tc04_g014962 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc04_g014962
Domain Number 1 Region: 586-671
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.16e-18
Family Retroviral integrase, catalytic domain 0.0097
Further Details:      
 
Weak hits

Sequence:  Tc04_g014962
Domain Number - Region: 237-267
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00126
Family Retrovirus zinc finger-like domains 0.006
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Tc04_g014962
Sequence length 785
Comment Putative Retrovirus-related like polyprotein
Sequence
MEKSSVSKLVNSPFIDSLSPYFLHHSNHHGSIVINPKLTSTNYVPWSRSFQLALSIINKF
GFIDGTICNNLIVAWLLESISPPIASTIFYMKSALDIWDTLKRRFFQSDDARVCNLQFTL
SNISQGTRSVDEYFSELNGVWEELRNFRPMPHCSCGECNREHFHKYVQQCQKDNVFKFLN
GLNESYAGLRSHIVMIKPFPSLDEAYNLILREKSQRSIHIQSQPLIQTPAIASTYVDGKK
KNRNDLSCSHCGKNGHTRDKCYKLIGLPHDFKFTEGKNNPRKSINNVVQHSHTKQGEHDT
ISTMSQLSLIKNQVQILMTTLNENGGTSIDDDSSASNSEQPKALLVNFTIVSLISNSVNY
MDQNARVNNSSKIISSIIKSNSWIIDTGASDHITCSLSFLTRAKPIHNAFVRMPDNSRAL
VSHIGTVKITHSLTLKNVLYVPSFRFNLISVSKLIENEQNCLIFTNFHYIIQEIKSWTMI
GLAKMEAGLYFLQGKPQLNDSVQTDLTQAMKNVSRFASEQFSPISLDYSSNFLGICNSVV
EQFDIWHLRLGHAPPAIIKQIQKVYPSISFVENNFFSICPLISSFSHGILHQMSCVETPQ
QNGVVERKHQHLLTVARSLMFQASLPLKFWGDFVLIAAHTINRMPFPVLQNKSPYEMLFN
KKTDYCHFRVFGSLCFASTLVHQRKKFDHRARKCIMIGYPVGIKGYRLYDLQTHNVFVSK
NVNFFEHIFPFKNVDSAPNSHEYIQFFSKIKFGSYIPFPISYSESSGYMDYDTSIHFPFN
ASISD
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Identical sequences Tc04_g014962

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