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Domain assignment for Tc06_g014571 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc06_g014571
Domain Number 1 Region: 703-1114
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.22e-25
Family Reverse transcriptase 0.042
Further Details:      
 
Domain Number 2 Region: 443-565
Classification Level Classification E-value
Superfamily Ribonuclease H-like 8.47e-21
Family Retroviral integrase, catalytic domain 0.021
Further Details:      
 
Domain Number 3 Region: 200-242
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000117
Family Retrovirus zinc finger-like domains 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc06_g014571
Sequence length 1167
Comment Putative Copia protein
Sequence
MATIGFSASTPPTFTGKNYRVWAVKMRSYLKAFHLWDVVENGEASVQRHANPTIFQGNET
TKMHQIMNLTREFKTLKMRDDEGVQAYLDRVLRIVNELRLLREVVTKRRIVAKFLISLPE
KFESKVTSLKDSKDLTKLTMNELINNLLALEQRRAMRAEYVESALVAKTKGLKIKRGSSK
KFEQKGKSKSGEEKQESSADKYSPCSICKKKNHSERYCWYRPNVKCRACQQMGHVEKVCK
AKKSESSTQAAIAEQEVNDNEVLFMAKMEEDSEKSNIWLLDSACSHHLTSDGKFLKILRV
GTVKVETASGYKCINSVHYVPEANQNLLSVGQLAEEHYALLFKDQVCTIFDPHGEELFIV
EMKNHCYPPNLADTAHLALNNEADLSETWHRRLGHVNNSSLSLMASKGLVEGLPAITKPD
KLCQTCQLGKQTRKSFPKVSKWKASRKLELVHTDLSGPMKNPSLNGSRYYILFIDDFTKY
CWVYFIKQKSNALEKFVQFKTLVENFSSTTIKILRSDNGTEFTTSEFERYLVDCGVQHQL
TVKMARCLLYQMNMPTYFLAEQTAYELWFGQKPSVAHFKTFGCLCYAKIADGKRSKFDAK
SSVEVFIGYSEVTKGYRLYDVKSKKVFISRYVNFGEGLFWNWKIKSADRIVKVTTTANLQ
VDDDSLHTEDERLAVRGTRSLQEIYSRCNVAIAEPSNFAEANNAWILVDRPSNQNVIGVK
WIIRTKLNPEGSVNKHKARLVVKGFTQVYGVDYLETFAPMARHDTIRLLAALSAKEGWKI
FHLDIQSAFLNGFLKEDIYVQQPEGFEEKGAEGKVCKLIKALYGLKQAPRAWYERMNDHI
RTHGFERSINKATLYVKKNDDSVKLIVAVYVDDLLITSSESDYLTEFKADMLKVFEMTDL
GLMTYFLGMEFEMDYCKAVRTPLAIGSRFCIDDGAEKANESMYRSIIGSLLYLAATRPDV
MFATSLLSRFMQAPSVHHFTAAKRILRYTKGTTSYGLRFLKSESCDLQGFTDSDWAGSVD
DLKSTRGYCFSFGSGVFTWSSRKQEVVAQSSAEVEYIATATAANQALWLRKVLIYLNFPQ
EKGTLIRVDNQSAMAIARNPVQHSRTKHIRVKFHALRDAVREGEIQLEYCHTDDQVADIF
TKGLSADRFEFLRDKLGVYPTRIKEVY
Download sequence
Identical sequences Tc06_g014571

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