SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Tc09_g019060 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Tc09_g019060
Domain Number 1 Region: 107-143
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000419
Family Retrovirus zinc finger-like domains 0.0056
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Tc09_g019060
Sequence length 321
Comment Putative uncharacterized protein
Sequence
MLTKSKLLEKTFSTFHALNMVSQQQYRQHQFKTYLELIFILLIVKQTNELLLKNHDLRPT
GSKALLEANANSSKSIGRFKDREHEQGHNLCRGGRRLNRPRQSNLGPNHGKGKKPVKKHN
ESICHRCGMVGHWSHTCRTPKHVADLYQAPLKDKGKRVETHAIENSTTMTNVEANNASIK
MTSLAHVEARTSLEVSDFFEDPDSQDKLSKQMQVGTIEKKKDVCLLDNATTHTIVCGKHF
FSNVTLRKANIHTLLGLSEIIDGSRNATVVLPNGTTLHIEDALLNNISMRNLRSFKDVLR
NWYHLKTIYEQNKECIYITFY
Download sequence
Identical sequences Tc09_g019060

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]