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Domain assignment for Tc09_g026831 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  Tc09_g026831
Domain Number - Region: 126-144
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00314
Family Retrovirus zinc finger-like domains 0.0064
Further Details:      
 
Domain Number - Region: 376-668
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.0365
Family Reverse transcriptase 0.048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Tc09_g026831
Sequence length 773
Comment Putative Gag-pol polyprotein
Sequence
MIAKYTAKDVGTQKFVIGNFYRWKMTDDKDIKSQIKEHHKLVDDLKAEKINLQEEFVAGL
LIEKLLESCNGYKQQLKHKEKQLSLADLIVHIIIEDTTRREIKAFKRQQMYPYKLDNKPK
ASYPTFEKKGSCFVCGKPGHHATQYKKRGKGNDKLANLRVNLVKVNESDDVIAYCNKGLF
VLNISNAQNENASSFACMISFIDLWHGRLGHVSIPYIKKMQSLGLISSIKNGCVNKCEIC
AETKSTKKTCISINREFELLSLIHTDLGDLKQIMTRGVWRCLAKVMLPEFKKRKIGSKTS
DCMFIGYAEHSVHIFPLRIDIISHAPFSNNDFEIQNDDLRRSKKPRKEISFGNDFYTYII
DNDPLTYVDIDSILQNKTWELIDLPIRAKSIGCKWIFKREFNPYSSIDKYKTRLVLKGFT
QKQNIDYFDTFPPITRISSIRILFALASIYKLVGCVIPSQENKVCKLTKSLYGLKQLINM
CTQKLLIVNVDDMLSFGTCIDVVNKTKCFLASKFDMKNLGETNVILGIKIIRCDSGLMLT
QEHYVEKLLKKFGHFDVTLVSTPYDSNIQLKKNRGDNVTQFKYTQIIGNLIPNQDHWTAL
SIMMKYLKGTIKYGILYNGFPTILEGYNDANWISDSNKTKSTSDYVFTLSGGLITLKSVK
QTIIAKSTRESKFVALELADNETEWLRNLLANISLGMKPTSSVSMHRDAKQHIRLRHDVV
KQLLKDEIISINYVKSDLNLVDPLNKPMGRKLINATSRGMRLKPTYMIGDPMN
Download sequence
Identical sequences Tc09_g026831

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