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  Home > Genomes > Sarcophilus harrisii 76_7.0 > ENSSHAP00000004814

Domain assignment for ENSSHAP00000004814 from Sarcophilus harrisii 76_7.0

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSSHAP00000004814
Domain Number 1 Region: 67-322
Classification Level Classification E-value
Superfamily YWTD domain 7.46e-42
Family YWTD domain 0.000019
Further Details:      
 
Domain Number 2 Region: 943-1220
Classification Level Classification E-value
Superfamily YWTD domain 5.75e-31
Family YWTD domain 0.0000899
Further Details:      
 
Domain Number 3 Region: 1-57,315-376
Classification Level Classification E-value
Superfamily Growth factor receptor domain 1.04e-18
Family Growth factor receptor domain 0.016
Further Details:      
 
Domain Number 4 Region: 807-849
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000406
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 5 Region: 644-681
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000101
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 6 Region: 522-562
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000196
Family LDL receptor-like module 0.00094
Further Details:      
 
Domain Number 7 Region: 683-719
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000209
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 8 Region: 404-444
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000209
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 9 Region: 725-769
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000012
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 10 Region: 604-639
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000196
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 11 Region: 367-402
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000209
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 12 Region: 561-601
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.00088
Further Details:      
 
Domain Number 13 Region: 487-523
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000288
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 14 Region: 446-483
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000419
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 15 Region: 851-934
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000115
Family Growth factor receptor domain 0.02
Further Details:      
 
Domain Number 16 Region: 1438-1480
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000147
Family EGF-type module 0.04
Further Details:      
 
Domain Number 17 Region: 1304-1340
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000081
Family EGF-type module 0.011
Further Details:      
 
Domain Number 18 Region: 1341-1375
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000995
Family EGF-type module 0.026
Further Details:      
 
Domain Number 19 Region: 771-803
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000123
Family LDL receptor-like module 0.004
Further Details:      
 
Domain Number 20 Region: 1267-1303
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000681
Family EGF-type module 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSHAP00000004814   Gene: ENSSHAG00000004225   Transcript: ENSSHAT00000004862
Sequence length 1652
Comment pep:novel scaffold:DEVIL7.0:GL849612.1:94891:456193:-1 gene:ENSSHAG00000004225 transcript:ENSSHAT00000004862 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
CKCWPGFQLKDDGKTCMDMDECSSGFPCSQQCINTYGTYKCLCTEGYEIQPDNPNGCKSL
SDLDEEPFLILADHHEIRKISTDGSNYTLLKQGLNNVIAIDFDYREEFIYWIDSSRPNGS
RINRMYLNGSDIKVVHNTAVPNALAVDWIGKNLYWSDTEKRIIEVSKLNGLYPTILVSKR
LKFPRDLSLDPRAGYLYWIDCCEYPHIGRVGMDGTNQSVVIETKISRPMALTIDYVNSRL
YWADENHIEFSNMDGSHRHKVPNQDIPGVIALTLFEDYIYWTDGKTKSLSRAHKTSGADR
LSLINSWHTITDIQVYHSYRQPDVAKHVCMLNNGGCSHLCLLAPGRTHTCACPTNFYLAA
DNKTCLSNCTASQFRCKTDKCIPFWWKCDTVDDCGDGSDEPDDCPEFKCQPGRFQCGTGL
CALPAFICDGENDCGDNSDELNCDTHVCLSGQFKCTKNQKCIPINLRCNGQDDCGDEEDE
RDCPENSCSPDYFQCKTTKHCISKLWVCDEDPDCADASDEANCDKKTCGPHEFQCKNNNC
IPDHWRCDSQNDCSDNSDEENCKPQTCTLKDFLCANGDCVSSRFWCDGDYDCADGSDERN
CETGCSKDQFQCATGQCISAKWKCDGHEDCKFGDDEKNCEPASPTCSSSEYICASGGCIS
ASLRCNGEYDCADGSDEMDCVTECKEDQFRCKNKAHCIPIRWLCDGVHDCVDGSDEDHCD
RGGNICRADEYLCNNSLCKLHFWVCDGEDDCGDNSDEVPEMCAKFPCPPTRPHRCRNNRV
CLRPEQICNEIDDCGDNSDEDHCGDKLTYKTRPCKKDEFACGDRKCIPMELQCDRFDDCG
DGSDEQGCRTVPSEYTCEDNVNPCGDDAYCNQTQTSVFCRCKPGFQRNMRNRQCEDLNEC
LVFGTCSHQCINMKGSYKCICDQNYKEKNNTCIAKSSEDQVLYISNDTDILGFIYPFNYS
GDHQQISHIEHNSRITGMDVYYQRDMIIWSTQFNPGGIFYKRVHGRERRQTTSGLICPEF
KRPRDIAVDWIAGNIYWTDHSRMHWFSYYTTHWTSLRYSINVGQLNGPNCTRLLTNMAGE
PYAIAVNPKRGMMYWTVVGDHSHIEEAAMDGTLRRILVQKNLQRPTGLAVDQFSQRIYWA
DFELSIIGSVLFDGSDSVISVSSKQGLLHPHRIDIFEDYIYGAGPKTGVFRVHKFGHSSV
EYLNLNVDKTKGALISHRYKQQDLPNPCLDLTCEFLCLLNPFGATCVCPEGKSLINGTCN
DESLLDDSCKLTCENGGRCIVNEKGDLRCHCWPSYSGERCEINHCTNYCQNGGTCVASAL
GRPTCSCALGFTGPNCNQMVCEKFCQNGGSCSVTAGNQPYCQCMPEYTGDRCQYYVCHHY
CVNSESCTIADDGNVECVCPTRYEGTKCEVDKCLRCHGGHCIINKDSEDITCNCTNGKIA
SSCQLCDGYCYNGGTCQLDPETNIPVCLCSANWSGTQCERPAPKSSKSDHISTRSIAIIV
PLVLLVTLITTLVIGLLLCKRKRRTKTIRRQPIINGGINVEIGNPSYNMYEVDHDHNDGS
LLDPDFIVDSAKVTSFSLEENKMRAPHRGLPKIFHNSLKKNETSVAPTNYSNPVYAKLYM
DGQNCRNSLGSVDERKELLPKKIEIGIRETVA
Download sequence
Identical sequences G3VNQ9
ENSSHAP00000004814 ENSSHAP00000004814

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.