SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Methanoculleus bourgensis MS2 > gi|397781344|ref|YP_006545817.1|

Domain assignment for gi|397781344|ref|YP_006545817.1| from Methanoculleus bourgensis MS2

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  gi|397781344|ref|YP_006545817.1|
Domain Number 1 Region: 1508-1768
Classification Level Classification E-value
Superfamily L domain-like 9.52e-59
Family Internalin LRR domain 0.0000231
Further Details:      
 
Domain Number 2 Region: 42-312
Classification Level Classification E-value
Superfamily NHL repeat 7.85e-50
Family NHL repeat 0.0000426
Further Details:      
 
Domain Number 3 Region: 2668-2754
Classification Level Classification E-value
Superfamily PKD domain 9.94e-30
Family PKD domain 0.00051
Further Details:      
 
Domain Number 4 Region: 724-869
Classification Level Classification E-value
Superfamily L domain-like 2.04e-29
Family Internalin LRR domain 0.0014
Further Details:      
 
Domain Number 5 Region: 2221-2302
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.00000000000235
Family Invasin/intimin cell-adhesion fragments 0.0095
Further Details:      
 
Domain Number 6 Region: 2308-2390
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.00000000000816
Family Invasin/intimin cell-adhesion fragments 0.0055
Further Details:      
 
Domain Number 7 Region: 1299-1380
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.0000000000235
Family Invasin/intimin cell-adhesion fragments 0.0083
Further Details:      
 
Domain Number 8 Region: 1212-1287
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.000000000204
Family Invasin/intimin cell-adhesion fragments 0.0083
Further Details:      
 
Domain Number 9 Region: 1960-2034
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.000000000283
Family Invasin/intimin cell-adhesion fragments 0.0083
Further Details:      
 
Domain Number 10 Region: 2047-2128
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.00000000033
Family Invasin/intimin cell-adhesion fragments 0.0089
Further Details:      
 
Domain Number 11 Region: 2134-2215
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.000000000502
Family Invasin/intimin cell-adhesion fragments 0.0089
Further Details:      
 
Domain Number 12 Region: 507-588
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.0000000022
Family Invasin/intimin cell-adhesion fragments 0.0059
Further Details:      
 
Domain Number 13 Region: 1126-1207
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.0000000022
Family Invasin/intimin cell-adhesion fragments 0.0063
Further Details:      
 
Domain Number 14 Region: 2395-2476
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.00000000471
Family Invasin/intimin cell-adhesion fragments 0.0073
Further Details:      
 
Domain Number 15 Region: 1873-1955
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.00000000581
Family Invasin/intimin cell-adhesion fragments 0.0063
Further Details:      
 
Domain Number 16 Region: 591-676
Classification Level Classification E-value
Superfamily E set domains 0.0000137
Family E-set domains of sugar-utilizing enzymes 0.058
Further Details:      
 
Domain Number 17 Region: 1383-1467
Classification Level Classification E-value
Superfamily E set domains 0.0000467
Family E-set domains of sugar-utilizing enzymes 0.033
Further Details:      
 
Weak hits

Sequence:  gi|397781344|ref|YP_006545817.1|
Domain Number - Region: 317-402
Classification Level Classification E-value
Superfamily E set domains 0.000171
Family E-set domains of sugar-utilizing enzymes 0.047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|397781344|ref|YP_006545817.1|
Sequence length 2759
Comment Internalin-A [Methanoculleus bourgensis MS2]
Sequence 
MDRSRVIAGAIVILLAVAVLAVPVAAEEYVFVTKWGEYGTGEGFKDPFDIAIDTAGHIYI
TETDANHILQRILKLDSSMNFITKWGSYGTGNGQFNGPQGIAVNAAGNVYVADTYNHRIQ
KFDSSGNLLTKWGSWGSGDGQFSYPDSVAVDAAGNVYVSDTNNGRIQKFDSDGTFLGKWG
SWGSGDGQLRFSQDLVVDAAGNIYVAEYGNHRIQKFDSNGNFLWKKGSSGSGDGQFLSPY
GITVDAAGNVYVADTWNHRIQKFDSSGNFLTKWGSRGSGNGQFSEPFGVAVDSAGNVYVT
ERGNDRVQMFAPASALTVTGIVPASGLNTGSVSITDLSGTGFANGATVNLTRTGETNIVA
TDVSVLSSTQITCTLDLTGAVAGSWNVVVTNPDNQFATLTDGFTVNAENRAPVAEDDTYT
TDEDTLLTISAPGVLANDNDPDGDALTAVLVDDVSNGTLTLNADGSFTYLPNTGFSDIDT
FTYTANDGTQSSNVATVSINVNPASAVLTSIVVTPVQPILEIGGTQQFTATGYDQYGTPL
PTGEIVWSSTNTTVGTIDATGLFTATAEGSTTVTATAGEVSGTAEVTVNPALTVTGIVPA
SGPNTGNVSITNLSGTGFVDGATVNLTRTGETNIVATDVSVLSSTQITCTLDLTGAAAGS
WNVVVTNPDGRYDILSDGFAVVAASEIVTFNDPNLEATVRGALGKPVGDITADDMATFIT
LGADWRGIRDLSGLEYAVNLQHLYLQQNRQISDLGPLAGLTDLQTLDLWNNQISDLSPLA
GLTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQIRDIGPLAGLTNLWELRLYNNQIR
DIGPLVANSGLGSGDEVYLQYNYLDLTPGSADMNDIQTLQSRGVYVAYEPQNPVPTYTLD
LAVNPEGGGTVTGAGTYKAGDTVPITATPNEGWEFVNWTNETGATVSSEPNFDYPMPEGD
VALTANFEGEAITYTLGLAVNPAGSGTVTGAGTYAAGDTVSVTATPNDGYTFVNWTDETD
VTVSTAASFDYTMPDGDVTLTANFAAITYTLDLAVNPEGSGTATGAGTYAAGATVPITAT
PNEGWEFANWTDGTGATVSSEATFDYTMPAQETALTANFEPAPPVLARIEVSPAEATLEV
GATRQFTATGYDQYGNPLSVGEIVWSSTNEAVGTIDASGMFTALAAGSTELVAEANGISG
KANVTVTPAAPVLTSIAVTPESPALEIGTTQQFTATCYDQYGQTMPDMAVSWSSSNTSVG
TIESNGMFTALTAGSTTVTASAAGVSGQTVATVNPAAPVVTRIAVSPPSVTLDIGDTQAF
VATCYDQYENEMPGTSVSWASDSTTVGTIDATGLFTATAEGSTTVTATAGDVSGTAEVRV
NPALTVTGIVPASGPNTGPVSITDLSGTGFADGATVKLTRDGEADIVATDVAVLSPTQIT
CTLDLTGAAVGTWNVVVTNPDEQYDILSDGFAVVAASEVVTFNDPNLEAAVRQELSKPKG
DITADDMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQ
DNQVSDLSPLAGLTNLQRLWLNQNQIRDVSPLAGLTNLRELLLAVNQISDLSPLAGLTNL
GYVQLYRNQISDLSPLAGLTNLGYVQLYRNQISDLSPLAGLTNLYFLDISYNQISDLSPL
ASLTNLYFLDISYNQISDISPLAGLTRLSRLSLDNNQISDISPLAGLINLYVLNLNYNQI
RDISPLVANSGLAGDDVYLQYNYLDLTPGSAAMNDIQTLQSRGVYVVYEPQHEVTKYTLD
LAVNPEGSGTVTGAGTYAAGYTVSITATPNEGWEFANWTDGTGATVSSEATFDYPMPARD
TALIANFEPAPPVLTRIDVSPVEAALEVGETRQFTATGYDQYGNTIPTGEIVWSSTNEAV
GTIDASGMFTALAAGSTELVAEANGISGKANVTVTPAAPVLTSIAVTPESPALEVGTTQQ
FTATCYDQYGQTMPEVTVSWSSSNTSVGTIESNGMFTALTAGSTTVTASAAGISGQTVAT
VNPAAPAVTRIAVSPLSVTLDIGDTQAFVATCYDQYENEMPGTSVSWASDSTTVGTIDAT
GLFTATAEGSATVTATAGDISGTAEVAVNPAPPVLTSISVSPAAPTIDAGDTQQFTATCY
DQYGQTMPEVTVSWSSSNISVGTIESNGMFTALTAGSTTVTASAEGISGQAVATVNLAAP
VITRIAVSPPSVTLDIGDMQTFVATCYDQYENEMPGTDVSWSSDDTTVGTIDATGLFTAT
AEGSATVTATAGEVSGTAEVTVNPAPPVLTSISVSPAAPTIDVGETQQFTAICYDQYGAP
ISDVSVIWSSENETVGTIDTSGLFTAIEEGATTITASANGISGTATVTVTPAPRVLTTVD
VSPATADIAVGETEQFTATCYDQNGEVMPDVSVTWSSSNEAVGTMTAGGIFTAHSEGATT
VTASAEGVSGSASVTVRRVNTAPIAVDDAFTTNIRTQLTVPAPGVLENDTDSDGDVLTAA
LVSKPSNGVLTLNTDGSFTYIPKGNFIGTDTFTYKANDGSLNSSVATVTITVLATNHAPI
AADDTVTMTQDTTYAAPAPGVLENDQDPDGDTVTAKLVSKVTYGSLKLKKDGSFTYIPKP
GFTGEDSFTYQTSDGKLSSDIATVRITVEPTAVIPPVADFSASPLGGKAPVFVQFTDTST
GTINSWTWTFGDGGTSTEQNPQYKYTRPGTYTVSLTVTGPGGSDTKTVTDYIQVTGKKA
Download sequence
Identical sequences I7KDQ7
gi|397781344|ref|YP_006545817.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.