SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|336476797|ref|YP_004615938.1| from Methanosalsum zhilinae DSM 4017

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|336476797|ref|YP_004615938.1|
Domain Number 1 Region: 4-284
Classification Level Classification E-value
Superfamily Methyl-coenzyme M reductase subunits 1.33e-145
Family Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 0.000000000673
Further Details:      
 
Domain Number 2 Region: 285-571
Classification Level Classification E-value
Superfamily Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 1.96e-145
Family Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 0.000000000237
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|336476797|ref|YP_004615938.1|
Sequence length 572
Comment methyl-coenzyme M reductase subunit alpha [Methanosalsum zhilinae DSM 4017]
Sequence
MTTDRERRFKKQLEIKFTKEFGDNKQSGGSITDTRNKYHRLGVDQDPRKREMREAGQKVA
KERGLVGYNPMMHCGGIPLGQRAITPSFVSGTDIMVEPDDLHYVNNAAMQQMWDDIRRTC
IVGLDMAHETLEKRLGMEVTPETINHYLEVLNHALPGGAVVQEYMVETHPALVDDCYVKI
FTGDDDLADEIDKQFLIDINKEFPEEQAEQLKKSIGKTTWQAAHIPTIVSRTTDGGQTSR
WIAMQVGMSFISAYNMCAGEAAVADLSYSAKHAAVVSMGDMLPARRARAPNEPGGLTFGH
MADIVQTSRKTPEDPANIALEVVGAGCMLYDQIWLGSYMSGGVGFTQYATAAYTNNILDD
NLYYDVDYINDKYDGAANTGTDNKVKPTLDVVKDIATESTIYGLENYEKYPTALEDHFGG
SQRATVLSAAAGSATAIATGHGNAGLSAWYLSMYLHKEAHGRLGFFGYDLQDQCGATNVF
SYQSDEGSPIELRGPNYPNYAMNVGHQGGYAAITSAAHAGRGDAFALNPLLKICFADDLL
PFDFTQPRKEFGRGALREFSPAGERSLIIPAK
Download sequence
Identical sequences F7XL13
gi|336476797|ref|YP_004615938.1| WP_013898158.1.3471

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]