SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|479151871|ref|YP_007782047.1| from Ruminococcus bromii

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|479151871|ref|YP_007782047.1|
Domain Number 1 Region: 460-515
Classification Level Classification E-value
Superfamily Type I dockerin domain 0.00000000000981
Family Type I dockerin domain 0.0043
Further Details:      
 
Weak hits

Sequence:  gi|479151871|ref|YP_007782047.1|
Domain Number - Region: 182-211,297-366
Classification Level Classification E-value
Superfamily Immunoglobulin 0.00123
Family V set domains (antibody variable domain-like) 0.043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|479151871|ref|YP_007782047.1|
Sequence length 517
Comment Dockerin type I repeat [Ruminococcus bromii L2-63]
Sequence
MKIKKKAKRISSVVLCFLMLLTTLPMTAITANAAVQAYIKYIDTEVYIGDVLNIIVGVNG
GSSDETFTYQWQAKYPSLSWGNLYDKTNHPDSKFSGVFTDHLKFQTYAELVGPGSGWKDV
VFRCKVTGSKSGTFYSGKCNFPGLLEKTEIPTIGFLGLEKPEQGKIPSTTATPINSTYYS
FDYIEWYKYENNKISRKLDSGETFDSGMYCCQLYFNMNKGYAVDKDAVCGLYNGDSQATI
LQDETTGQYYIWAYYNVPYESPSFTHQFPEAEIMIMKGKEEIIWVAAKNAASYQWQMKVK
RRTPTGIIRMWKNIDDDSSTLNQFSFKGTKSNTLRIRPNTDFDETQFRCAVTGKNGDVIY
SESVKVTQKFNACIIIDFRTGGSPDDTITVKFDKYTPGGVYKSSFTDEIVHKNATLYYYQ
TGTGKYVITVSKPQCVTRVYEVNVDKKDVNLDVNITVPYDVNMDGVINVVDATLVQKYIV
GLEEFDDYTLKIADTNGDGTISVIDATNIQKKIVNLL
Download sequence
Identical sequences D4L9H5
gi|479151871|ref|YP_007782047.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]