SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|301603975|gb|XP_002931633| from Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|301603975|gb|XP_002931633|
Domain Number 1 Region: 526-572
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000523
Family TSP-1 type 1 repeat 0.00074
Further Details:      
 
Domain Number 2 Region: 101-137
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000772
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 3 Region: 45-93
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000667
Family TSP-1 type 1 repeat 0.0031
Further Details:      
 
Domain Number 4 Region: 481-520
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000168
Family EGF-type module 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|301603975|gb|XP_002931633|
Sequence length 572
Comment PREDICTED: complement component C8 beta chain [Xenopus (Silurana) tropicalis]
Sequence
MFLYWTLFLYLALHCCSCEKHPNATKTTLSHKRCRRSVASPPQPVDCDFSSWSDWSSCDP
CQKKRFRFAKLTQASQFGGEPCNRIDRQEEVCATRSPCRNTKKCEGFQCTETGRCIVRRL
LCNGDDDCGDLSDEKNCKSVPSSCSDDMEQYWGIENLASGINLFTNSREGFVLDHRYYAG
GCSPHYILNTKFRKPYNVENFIPESKGKYEFSLSEHESYSDYERSFLSGHAKQTSFGIGL
KIPGLFEIGFNYNDMKVKTFMERIKRFSHTKSKFLSARSTLQVAQYKLKSRNLMLHTEFF
QRVKQLPLQYVYGEYRDLFRDYGTHFITEATLGGIYEYTLILNNEKLKKEGYSLNDVQKC
AQAGFKIGANIEGIWLSAGMSAGACSGLLKEIGEKISSDKLVEDFVALVRGGASEQITTL
AYKDLPTQDLMQEWGDAVYYNPDIINIKSSPLYELVTAADFTGANILQENMKLALEEFQA
ETSSCSCVPCQNNGLAVFIENRCECICPLGFTGMACEITKRPVNVIDGSWSCWSSWTPCS
RRIQTRDRQCNNPSPQNGGNQCEGTNTDTRNC
Download sequence
Identical sequences F6R5H7
ENSXETP00000024355 gi|301603975|gb|XP_002931633| XP_002931633.1.99540 ENSXETP00000024355

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]