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  Home > Genomes > Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) > gi|301608470|gb|XP_002933812|

Domain assignment for gi|301608470|gb|XP_002933812| from Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|301608470|gb|XP_002933812|
Domain Number 1 Region: 4831-5045
Classification Level Classification E-value
Superfamily GFP-like 2.09e-58
Family Domain G2 of nidogen-1 0.0004
Further Details:      
 
Domain Number 2 Region: 4127-4225
Classification Level Classification E-value
Superfamily Immunoglobulin 7.12e-25
Family I set domains 0.011
Further Details:      
 
Domain Number 3 Region: 1648-1735
Classification Level Classification E-value
Superfamily Immunoglobulin 3.42e-24
Family I set domains 0.0053
Further Details:      
 
Domain Number 4 Region: 3953-4042
Classification Level Classification E-value
Superfamily Immunoglobulin 4.29e-24
Family I set domains 0.011
Further Details:      
 
Domain Number 5 Region: 2472-2570
Classification Level Classification E-value
Superfamily Immunoglobulin 6.57e-24
Family I set domains 0.0052
Further Details:      
 
Domain Number 6 Region: 1731-1828
Classification Level Classification E-value
Superfamily Immunoglobulin 2.38e-23
Family I set domains 0.011
Further Details:      
 
Domain Number 7 Region: 4391-4488
Classification Level Classification E-value
Superfamily Immunoglobulin 6.77e-23
Family I set domains 0.012
Further Details:      
 
Domain Number 8 Region: 2963-3060
Classification Level Classification E-value
Superfamily Immunoglobulin 7.85e-23
Family I set domains 0.0072
Further Details:      
 
Domain Number 9 Region: 2379-2479
Classification Level Classification E-value
Superfamily Immunoglobulin 8.55e-23
Family I set domains 0.014
Further Details:      
 
Domain Number 10 Region: 2786-2870
Classification Level Classification E-value
Superfamily Immunoglobulin 1.1e-22
Family I set domains 0.042
Further Details:      
 
Domain Number 11 Region: 2007-2106
Classification Level Classification E-value
Superfamily Immunoglobulin 1.33e-22
Family I set domains 0.0028
Further Details:      
 
Domain Number 12 Region: 2578-2666
Classification Level Classification E-value
Superfamily Immunoglobulin 2.23e-22
Family I set domains 0.015
Further Details:      
 
Domain Number 13 Region: 3628-3720
Classification Level Classification E-value
Superfamily Immunoglobulin 3.08e-22
Family I set domains 0.019
Further Details:      
 
Domain Number 14 Region: 43-218
Classification Level Classification E-value
Superfamily vWA-like 6.18e-22
Family Integrin A (or I) domain 0.026
Further Details:      
 
Domain Number 15 Region: 612-703
Classification Level Classification E-value
Superfamily Immunoglobulin 9.19e-22
Family I set domains 0.0078
Further Details:      
 
Domain Number 16 Region: 2879-2967
Classification Level Classification E-value
Superfamily Immunoglobulin 9.86e-22
Family I set domains 0.01
Further Details:      
 
Domain Number 17 Region: 2297-2386
Classification Level Classification E-value
Superfamily Immunoglobulin 1.3e-21
Family I set domains 0.0065
Further Details:      
 
Domain Number 18 Region: 1913-2013
Classification Level Classification E-value
Superfamily Immunoglobulin 1.6e-21
Family I set domains 0.011
Further Details:      
 
Domain Number 19 Region: 1092-1181
Classification Level Classification E-value
Superfamily Immunoglobulin 1.83e-21
Family I set domains 0.012
Further Details:      
 
Domain Number 20 Region: 1451-1548
Classification Level Classification E-value
Superfamily Immunoglobulin 2.52e-21
Family I set domains 0.02
Further Details:      
 
Domain Number 21 Region: 1822-1920
Classification Level Classification E-value
Superfamily Immunoglobulin 3.91e-21
Family I set domains 0.0074
Further Details:      
 
Domain Number 22 Region: 2679-2765
Classification Level Classification E-value
Superfamily Immunoglobulin 3.95e-21
Family I set domains 0.01
Further Details:      
 
Domain Number 23 Region: 3243-3343
Classification Level Classification E-value
Superfamily Immunoglobulin 7.43e-21
Family I set domains 0.0075
Further Details:      
 
Domain Number 24 Region: 4035-4132
Classification Level Classification E-value
Superfamily Immunoglobulin 7.7e-21
Family I set domains 0.0078
Further Details:      
 
Domain Number 25 Region: 3712-3802
Classification Level Classification E-value
Superfamily Immunoglobulin 7.76e-21
Family I set domains 0.0086
Further Details:      
 
Domain Number 26 Region: 4318-4407
Classification Level Classification E-value
Superfamily Immunoglobulin 9.42e-21
Family I set domains 0.012
Further Details:      
 
Domain Number 27 Region: 519-617
Classification Level Classification E-value
Superfamily Immunoglobulin 1.81e-20
Family I set domains 0.024
Further Details:      
 
Domain Number 28 Region: 1268-1360
Classification Level Classification E-value
Superfamily Immunoglobulin 1.97e-20
Family I set domains 0.0073
Further Details:      
 
Domain Number 29 Region: 3337-3436
Classification Level Classification E-value
Superfamily Immunoglobulin 2.65e-20
Family I set domains 0.0074
Further Details:      
 
Domain Number 30 Region: 3856-3951
Classification Level Classification E-value
Superfamily Immunoglobulin 3.01e-20
Family I set domains 0.034
Further Details:      
 
Domain Number 31 Region: 1367-1454
Classification Level Classification E-value
Superfamily Immunoglobulin 4.77e-20
Family I set domains 0.014
Further Details:      
 
Domain Number 32 Region: 1171-1263
Classification Level Classification E-value
Superfamily Immunoglobulin 5.26e-20
Family I set domains 0.0067
Further Details:      
 
Domain Number 33 Region: 1541-1639
Classification Level Classification E-value
Superfamily Immunoglobulin 6.46e-20
Family I set domains 0.013
Further Details:      
 
Domain Number 34 Region: 793-887
Classification Level Classification E-value
Superfamily Immunoglobulin 1.07e-19
Family I set domains 0.011
Further Details:      
 
Domain Number 35 Region: 3068-3154
Classification Level Classification E-value
Superfamily Immunoglobulin 1.29e-19
Family I set domains 0.0082
Further Details:      
 
Domain Number 36 Region: 895-988
Classification Level Classification E-value
Superfamily Immunoglobulin 1.63e-19
Family I set domains 0.015
Further Details:      
 
Domain Number 37 Region: 702-790
Classification Level Classification E-value
Superfamily Immunoglobulin 1.66e-19
Family I set domains 0.019
Further Details:      
 
Domain Number 38 Region: 2101-2196
Classification Level Classification E-value
Superfamily Immunoglobulin 3.4e-19
Family I set domains 0.0065
Further Details:      
 
Domain Number 39 Region: 3443-3530
Classification Level Classification E-value
Superfamily Immunoglobulin 3.79e-19
Family I set domains 0.018
Further Details:      
 
Domain Number 40 Region: 977-1075
Classification Level Classification E-value
Superfamily Immunoglobulin 3.83e-19
Family I set domains 0.023
Further Details:      
 
Domain Number 41 Region: 4213-4309
Classification Level Classification E-value
Superfamily Immunoglobulin 8.19e-19
Family I set domains 0.018
Further Details:      
 
Domain Number 42 Region: 3523-3623
Classification Level Classification E-value
Superfamily Immunoglobulin 1.39e-18
Family I set domains 0.0099
Further Details:      
 
Domain Number 43 Region: 3167-3248
Classification Level Classification E-value
Superfamily Immunoglobulin 2.06e-18
Family I set domains 0.0054
Further Details:      
 
Domain Number 44 Region: 2190-2291
Classification Level Classification E-value
Superfamily Immunoglobulin 6.72e-18
Family I set domains 0.0092
Further Details:      
 
Domain Number 45 Region: 4658-4715
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000000144
Family TSP-1 type 1 repeat 0.0002
Further Details:      
 
Domain Number 46 Region: 4544-4601
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000000314
Family TSP-1 type 1 repeat 0.00035
Further Details:      
 
Domain Number 47 Region: 4488-4544
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000000085
Family TSP-1 type 1 repeat 0.00035
Further Details:      
 
Domain Number 48 Region: 4772-4829
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000000157
Family TSP-1 type 1 repeat 0.0003
Further Details:      
 
Domain Number 49 Region: 4715-4772
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000000235
Family TSP-1 type 1 repeat 0.00026
Further Details:      
 
Domain Number 50 Region: 449-526
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000000567
Family I set domains 0.047
Further Details:      
 
Domain Number 51 Region: 4600-4658
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000654
Family TSP-1 type 1 repeat 0.00028
Further Details:      
 
Domain Number 52 Region: 5226-5271
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000000622
Family EGF-type module 0.015
Further Details:      
 
Domain Number 53 Region: 5097-5219
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000000573
Family Growth factor receptor domain 0.0099
Further Details:      
 
Domain Number 54 Region: 3812-3860
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000728
Family V set domains (antibody variable domain-like) 0.068
Further Details:      
 
Domain Number 55 Region: 5062-5114
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000138
Family EGF-type module 0.012
Further Details:      
 
Weak hits

Sequence:  gi|301608470|gb|XP_002933812|
Domain Number - Region: 5258-5301
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00519
Family EGF-type module 0.022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|301608470|gb|XP_002933812|
Sequence length 5422
Comment PREDICTED: hemicentin-1 [Xenopus (Silurana) tropicalis]
Sequence 
mfpcrtlclqyllllllvqlliqnscgvaepetpyipdgastlafvfdvtgsmyddlvqv
iegaskiletslnrpkkplynfalvpfhdpeigpvtittdpekfqnelkelyvqgggdcp
emsvgaikialeislpgsfvyvftdarskdyqltnevlqliqqkqsqvvfvltgdcddrs
hhgykvyeeiastssgqvfhldkkqvnevlkwveeavqaskvhlistdhsggashtweip
fdpslkevtvslsgpspgielydpsgkrmtpetglnellnifnsakvinmkepvpgmwki
ktssngrhsvrmtgvstidfrvgfsnkptldfsktssrpiqgiptyvllntkglsypakv
erlellttsgsllktlpikyypdrtpyeiwnvteffppneaffikiigydkddylfqrvs
svsfsniipgapkvsmpkitpgyylqsgsvpcfveslipvtvrfskngvklgtdqkfres
vnasweianvsvsdegyydcyasssagsaraqtfldvnepppvikapsnitvtvgkgail
tcdvvstvrfnltwlrnnldlkhmnpsklsilrnnsleiksvtiddggeyncfasneggt
atasvtliaqdppkavleprnvtftkgaeiklkclvtgyptphiiwmhndmfvrfsnryi
ithngtfiiknaverdsgvykclatnaagtdhqtsvmvyievpqvtavknemlvpvgset
tlackatgiprplihwykeniklspsalitidsllgtlkikntqfsdaghyvciavndag
kangkvslrvgsppvftqtpgdvsmdigsdvsltcsaegipepkikwrrlnhtsesskpl
syqynsqqkagtlqinklwvgdegiyiceaenqfgkissqatitvtglvvpvigespsvv
sviegnqvtlpcvllvgnplperhwvkdnvvlvtnpytsiradgslhlervllkdggdyl
ctaknvagtadrittinvhvspviqhgpqifstiegiavslpckasgvpkptiiwkkkge
ivvpnndtiiaesdgtlllsspggedsgeyscsainaagyaarkvqltvyvkprivspda
ngssiaqknqieisvragddvilpcevksvpppfitwaketqlispfsqrhsifpsgslk
ifetrvsdagmytcvgtniagnitqlvklsvyvppkiqrgpklirvklghsfeiacishg
ippptaawykdgqimefdqgqdnnmlrvesakpsdggtytcvasnvigtdsanatveiya
pptlsdleppynkqnqerisrqqisfpcpvkghpkpvikwfrngkeltgsepgvnivedr
avlvidsltpydngeytcvasneagqtekkyslkvhdpplikdmdiisnvsvllhqtmsl
lceasgsppplitwykgrtqvdesatvqilekgkilkilkmalkdsghytckanniages
kkqyfvnvldpptiagvgtisdvsviagrevnleckvkgipfpsiqwfkenrllstedpn
vvmlengqvlhikhsrlsdsgkykciaantagsqtkeikltvyiaptikdgnsttdlsft
vngeinlecdargippptiiwykdgepllpspyvtyiqkgkylritesqitdggtytcsv
tnvagqteknysvdiyvparihgdekkhqnkkvivgksltleceatghppplitwlkdgv
pvetndnirlhyngkkleirntveydrglytcvavnvagetemkykvsvlvppsieggnd
padhtviasgaveleclasgtplpsvmwlkngtpvdtsgrliiqsnghkllisstessds
gnyqcvvkneagsstkqfnvvvhvrptikpvaspvsilmhkattlqciasgipnphitwl
kdglpfnvakanikmesfgrslqfkktlledagkytcvatnaageaeqtiwlnvyeppki
ensgeliqetvlanhniileckatgnpdpvvtwfkdnqqltntgdisvsdrgqvlqisga
qvfhagtykcvaasiagraelsynlqvhvppsisgrsssitvivnnvvrleceatgfpap
sltwlkdgspvssftngiqilsggrvlaltnaqvgdagkytcvavnaageqqtdydlsvy
vppnimgeeqnisslisetlilkcesdaipppvltwykdwkplvnrpgltisedgsilki
egaqvkdtgrysceavniagkteknfnvnimvppairgsaeesevniiegtlisllcdst
gipppalawkkndvaiqsgaaghirllsggrqlqiitarksdaasytctasnsvgsamkk
ytvkvyvrpsisesgnhpseivviqgnnvtlecdargdpqpmltwlkegiplisgngfei
ssngrllhlqkaqisnaglyvcvavnvagqsdrkydlkvfvppafpdgimkhenisivek
npftltcevsgipppkvtwykdgnpippsrspqimsggfllrfsqsslsdtgrytcavsn
aagedmrkfdvnvlvppkitgsvqeeikvkergnitlsceatgtpipqitwlkdghpvle
dtnhridhkgqllrisnvmmtdsgryvcvasnpagersrsfslgvlisptikgaingspe
dvkvvllssislecevhshppatitwhkdgrlfkfkdnvrilpggrtlqilkaqekdagr
ysciatneagegthhynlnvhippkirkddisefggfskeikaivntnftlvcdvkanpl
akitwykdgqplepdshlaivsgntlyvekaqvsdtgrytclasniagedeldfdvtiqv
ppnfpklsglwttsksstgssngehkeviinnpfslycetnavppptitwykddklltps
nrafilpgghilqiaraqeddagtytcvavneagrdsmhynvrvllppafegsdedlskd
itslvnetlemdctvavtgspaptiswlkdghpiqegtryhfltngrtlkilyaqlmdtg
ryvcvvenpagsvqksfnlniyvppsvigsnsenvtvvesnfisltcevtgfpppavswl
kdtmvlnsdshlfivpggrtlqipqtrlsdvgeysciainqageakktffldiyappsiv
anvrdsstevnvkvnastilecesnaipapvinwykngqpiretssyqfleggqrlnirn
aqvfdtgeyecivtnvvgqdnkkfflnvyvhpsiqglqneyhngiiqnsvtfscdaygip
vptlrwlkdghpigltdsleiqilsggskmkiaraqltdggtytclasnvegtaektyil
tiqvppsidgsgmtnelnvlpgeiiqlicnakgiptpvihwlkdgkhitsedylginits
dgeiltisktqtsdmgkytcvatnpageddriynvnvfvapkiddnkgtpvvltavldts
invechasgfptpqinwlknglplpvssqvrlqsggqvlrisrvqksdgatytciasnra
gvdkkdyniqvyvspsldeadvtqqitvirddpvvmrciangvpapriswlkdgkqlgde
ylpyiqsqgmvlhivkakmddiarytcvasnaagrvskhfilnvmepphingsevteels
vvvnthldllcyttgfppplitwlkdgqplsqndnmhlmkagqvlritsaqvenvgrfvc
lasnhagdtkkeflvkvhippniagvsgtqnitvlqkkqitmecksdalpppritwlkdg
qplqpspmvhilsngqfvqidntevtdtgrytciatniagkttkefilniqvppsieegp
slvtafvdepvtlecissgvplpktawrkdgsllshhnarflvsqngslyisavevadsg
qyfclatnaagssqrqidllvygmynsamtqdmrqllssgslviispsvddtgiyvcsal
sdagddeidmylsvhvpptiadeaanifvtklspavipctvsgvpfpsvhwlkdsiqlpa
isdsyrilpsgsleipssrlshagkytcravnqvgsahihvnlhvqevpvikeqndylev
vlsnsvtlaceasgtpiptiswqkegvgiksgssytilsngnlniasatqedagtytcia
qnpagtalkkvrlkvhvppvivphqkeyvismdksimivceahgsptpeiiwhkdgvpla
klagqrmsatgglhiavvqpddageytctaeniagsvnssmnlsvlvpprivknikdvsv
vindqttlpcaahgiptptitwaknnlpitvkagkysvlasgelilynaqhkdvgtytct
asnaigedthtvrltvhfppsftemptivslnegerlsllckatgnplphttwifkdkil
pvlqdrrskqqnelvidkvsrensgaymcvaenivasinttihvfvkeppvlngvhnkhr
tvplggniilncvvkgnpfpkiqwhkkakvisynkhikefsngslaiydagledvgdytc
iaandagvlehtvtltlqrpptikvppldttvdagatvalncqsegepvptitwyrhnnp
issedritilpnnslqivsaqkedtsvyeckatnimgtdvvkvtftvqvhggfsewlpwq
scsvtcgqgiqrrirlcdnplpanggnycqgaetetrscqnklcpvdgnwsewstweecs
rscgsgkrtrvrtcsdppaqeggkpcigkavdvavcnvkpcpvhgmwgpwqswgactktc
wkgtkmrvrlcnnptpspdglpcegqdtqmqicgdrqcpvdgkwsawgswtscslscggg
lrqrtracsnpapqygghkcegnehenemcnadlcpvhgnwgpwshwgscsrtcnggqmr
ryracdnpapshsgractgtdtetnkcntdlcpahgnwgqweawskcsvscgggeqirtr
vchhparsytgrpcpgdstqllrcnvqacpggpqrvkgnlfgrindldfgmaplnatitd
dpnsgsrilqakftnipkslgpsmrnlvsllnpiywttakeigeavngfsltggifkres
qvefatgeilkithtargvesdgsllldtvvkgnvlqlqtsvdihlkdytedyiqtgpgq
vhaystrmfsvdgvyvpytwnhtinydvgqgtmpfltetlqvnsietdynpqeeslsfqv
hasisrgdlsiqcpsgfsldstglyctdidectledsicrknqeckntvgsyicgvkcgv
gfraaandlvcqdineclesnpchqrclnsvgsyhcgcdtgyqlkgrrcidlnecrhgvc
rqdqlckntrgsykcidvcpigltraengtcvdinecqdgthlcknnqicentlggylyi
necekgdvcqhecrnvlgsykclcppgyqlmangktcqdidecleqniqcgmnrmcfnmr
gshqcidtpcppnyirdtisgyclkncapndlecalspyalqyklvslpfgiaanqdlir
lvaytedgilhprttflitddyaslpfsireenmkgvvftnrplqkpetyrmkvkalsys
idrtieyqtafivyiavspypy
Download sequence
Identical sequences gi|301608470|gb|XP_002933812|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.