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Domain assignment for gi|301610337|gb|XP_002934714| from Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|301610337|gb|XP_002934714|
Domain Number 1 Region: 630-738
Classification Level Classification E-value
Superfamily PDZ domain-like 1.26e-25
Family PDZ domain 0.0083
Further Details:      
 
Domain Number 2 Region: 510-602
Classification Level Classification E-value
Superfamily PDZ domain-like 1.31e-22
Family PDZ domain 0.0069
Further Details:      
 
Domain Number 3 Region: 283-369
Classification Level Classification E-value
Superfamily PDZ domain-like 1.58e-19
Family PDZ domain 0.015
Further Details:      
 
Domain Number 4 Region: 382-475
Classification Level Classification E-value
Superfamily PDZ domain-like 2.63e-19
Family PDZ domain 0.013
Further Details:      
 
Domain Number 5 Region: 27-94
Classification Level Classification E-value
Superfamily RING/U-box 0.00000000000117
Family RING finger domain, C3HC4 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|301610337|gb|XP_002934714|
Sequence length 742
Comment PREDICTED: e3 ubiquitin-protein ligase LNX-like [Xenopus (Silurana) tropicalis]
Sequence
MESNDAIEELDNEKPQSLCTVCGQLHSEEENHSYTYTEEVDDDLLCNICLHALIQPLDTP
CGHTYCTLCLTSFLVHEDFCPVDRKHILLQTCKKSTILVKNLLDKLPVICPFKEHCTDIV
QRCDLEEHFQNRCKGASHYGLTKERKRRSQDSSADCSSSLDLTVAAVSPELSASAAIALA
TEETGQDNPAFSPAKGESHTACEAEENCRLNRNRNRNFERSTVRSLSFKKLNRAFSVLRR
TKSGSSVVHASDRERANLQNANIVEDPMGLPRQYHLIPDGEITCIKINRADLNEILGIRI
VGGNETPLTQIIIQHIYQDGVIGRDGRLLPGDMILKVNGIDISSVPHTYALSVLRQPSKV
LRLTVLREQRYKCRTNGVTMEQHSPQDDSIHVVLNKSSHDVQLGIKLVRRRDEPGIYIFN
LLEGGVAARDGYLQENDRVLSINGHDLRNGTPEIAAQLIQASEEGVYFIVSRHSRHQTPD
ILQEARWHNNNDSPATCTNERNYFNKNASRTVLCHEKVVSITKDNTESLGMTVAGGASNW
EWDLPIFVTSVDADGVIGRDGRLKTGDILLNVNGINLTGVSRSEAVSLLKNSSSSSVVLK
ALEIKEYEPEEDNLNNALYMDYLQNGSEQNREWSPVWVMWLNLPHYLYSCREVVLRRNTA
GSLGFSIVGGSDDCSRIKPFFIKSILEGTPAHHDGRLRCGDILLEVNGRCTSGMPYNSLV
RMLKEIRGRVVLTIVSWPGSYL
Download sequence
Identical sequences F7DYU9
8364.ENSXETP00000025540 ENSXETP00000025540 ENSXETP00000025540 gi|301610337|gb|XP_002934714|

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