SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|301627062|gb|XP_002942697| from Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|301627062|gb|XP_002942697|
Domain Number 1 Region: 594-849
Classification Level Classification E-value
Superfamily YWTD domain 4.84e-54
Family YWTD domain 0.00000377
Further Details:      
 
Domain Number 2 Region: 3-242
Classification Level Classification E-value
Superfamily YWTD domain 3.79e-53
Family YWTD domain 0.00000202
Further Details:      
 
Domain Number 3 Region: 293-531
Classification Level Classification E-value
Superfamily YWTD domain 1.44e-51
Family YWTD domain 0.00000234
Further Details:      
 
Domain Number 4 Region: 897-1154
Classification Level Classification E-value
Superfamily YWTD domain 2.09e-38
Family YWTD domain 0.0000452
Further Details:      
 
Domain Number 5 Region: 851-900
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000356
Family EGF-type module 0.013
Further Details:      
 
Domain Number 6 Region: 1287-1325
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000995
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 7 Region: 1209-1247
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000484
Family LDL receptor-like module 0.00088
Further Details:      
 
Domain Number 8 Region: 1249-1284
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000694
Family LDL receptor-like module 0.00094
Further Details:      
 
Domain Number 9 Region: 550-596
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000014
Family EGF-type module 0.008
Further Details:      
 
Domain Number 10 Region: 245-286
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000207
Family EGF-type module 0.0076
Further Details:      
 
Weak hits

Sequence:  gi|301627062|gb|XP_002942697|
Domain Number - Region: 1165-1219
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00011
Family EGF-type module 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|301627062|gb|XP_002942697|
Sequence length 1574
Comment PREDICTED: low-density lipoprotein receptor-related protein 6-like [Xenopus (Silurana) tropicalis]
Sequence
mkgnstvvvsgledaaavdfvffrgliywsdvseeaikridfnktgsshdvvisgllspd
glacdwlgeklywtdsetnrievsnldgslrkvlfwqeldqpraialdptrgymywtdwg
dvpkieragmdgslrsviidsdiywpngltldydeqklywadaklsfihkanldgshrqt
vikgslahpfaltlfgdtiywtdwttrsilacnkytgedrrevdsdifspmdihvfsrlr
qpnatnpcavhnggcshlclmspmepfyqcacptgvrlmedgkmcmhgatellllvrrtd
lrrisldtpdftdivlplddirhaiaidydpvegyiywtddevrairrtqidgsssqyiv
tsqvahpdgiavdwvarnlywtdtgtdrievtrlngtmrkilisedldepraivldpmng
ymywtdwgeipkieraamdgsdriilvntslgwpnglaldyaegkiywgdaktdkievmt
tdgtgrrvlvedklphifgftllgdyvywtdwqrrsiervhkrtgereviidqlpdlmgl
katnihkmsgtngcaennggcshlclfrpqgprcacpiglelisdmktcivpeafllfsr
radirrisletsnshvaipltgvkeasaldfdvtdnriywtdvslktisrafmngsaleh
vvqfgldypegmavdwlgknlywadtgtnrievskldgqhrqilvwkdldspralaldpa
egfmywtewggkpkidrtamdgsgritlvpdvgrangltidyaerrlywtdldtnliess
nmlgldrvviaddlphpfgltqyqdyiywtdwsqrsieranktsgqnrtmiqndldyvmd
ilvfhssrqagwnecassnghcshlclatpvsgytcgcpvhhslnadnktcsppssfllf
sqknainrmvideqqspdiilpihnlrnvraidydplekqlywidsrqnirraqedgsqs
mtvvastvpnqnidmqpydlsidvysrliywtceatnvinvtrldgraigvvlkgeqdrp
railvnpergymyftnlqerspkieraaldgterevlfftglskpvalaldnkmgklfwa
dsdlrriessdlsgghrivledsnvlqpvgltvfgnhlywidrqqqmieriektgrvgrt
kiqariplltdihavtelsmdeykehpcsqdnggcshicivkgdgttrcscpmhlvllqe
delscgepptcsplqftcftgevdcipaewrcdgftecedhsdeqncpmcsdtqyqcasg
qcidsslrcngeancqdksdekncnevcapdqfhcgsgqcigkhrrcdlspdcsdssdeq
acypteeppppstntigsiigviltvfvvggvyficqrvlcrrmkgdgetmandyvvhgp
asvplayvphpssltgslpgmsrgksvisslsimagssgppydrahvtgassssssstkg
tyfppilnpppspatershytmefgyssnspsthrsysyrpysyrhfappttpcstdvcd
sdytpshritsaaakgytsdlnydsepvpppptprsqylsaeenyescppspytersysh
hlyppppspctdss
Download sequence
Identical sequences A0A1B8Y215
XP_012814842.1.99540 gi|301627062|gb|XP_002942697|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]