SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|301608498|gb|XP_002933799| from Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|301608498|gb|XP_002933799|
Domain Number 1 Region: 194-462
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 2.23e-82
Family Nuclear receptor ligand-binding domain 0.00000000364
Further Details:      
 
Domain Number 2 Region: 141-223
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 4.99e-31
Family Nuclear receptor 0.0000106
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|301608498|gb|XP_002933799|
Sequence length 468
Comment PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana) tropicalis]
Sequence
MDTQYHPIMKFPAGFSNAPLHAHSTSVSSSSNLAAMNSLDVHTGYMGNSMNGPRSMTTNM
NSLCSPGNNIGPPYRVIASSMGPHSLPSPTILNFPGHESPPFNLMNNISCSEDIKPPPGL
SNLGSPCMNNYSCNSPGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTC
RDTKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMP
VERILEAELAVEPKIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPL
EDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELV
SKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGR
FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPHQIS
Download sequence
Identical sequences F6ZPK4
XP_002933799.1.99540 ENSXETP00000010295 ENSXETP00000010295 gi|301608498|gb|XP_002933799|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]