SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|27379129|ref|NP_770658.1| from Bradyrhizobium japonicum USDA 110

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|27379129|ref|NP_770658.1|
Domain Number 1 Region: 78-212
Classification Level Classification E-value
Superfamily GntR ligand-binding domain-like 4.45e-26
Family GntR ligand-binding domain-like 0.012
Further Details:      
 
Domain Number 2 Region: 12-76
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.00000000000000152
Family GntR-like transcriptional regulators 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|27379129|ref|NP_770658.1|
Sequence length 230
Comment transcriptional regulator [Bradyrhizobium diazoefficiens USDA 110]
Sequence
MSVMPTASLDRDRAYALLRDLVVSGEFAPDEPLSERSLSSRLALGRTPIREALKALAKDG
LLTIHPMRGTFLRQMSFDDLREIHELRLALEGMAAYLAATRGPTEPLRQCAGELRSIQSR
ENIDVEEAQQVGWAFHDELFRATGNGRLAQSYDNLRAQSGLALQKMRQYSVERTRQAVSE
HLDIYAAIEAHDPDAAQQRMWRHLSSAFEARLTALGAIRTQYPGQGDHHA
Download sequence
Identical sequences A0A2A6N2D8 Q89N24
224911.bll4018 gi|27379129|ref|NP_770658.1| NP_770658.1.11505 WP_011086794.1.15658 WP_011086794.1.90507

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]