SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|297527571|ref|YP_003669595.1| from Staphylothermus hellenicus DSM 12710

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|297527571|ref|YP_003669595.1|
Domain Number 1 Region: 10-176,206-220
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.21e-48
Family Ribonuclease PH domain 1-like 0.00000417
Further Details:      
 
Domain Number 2 Region: 192-276
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.29e-20
Family Ribonuclease PH domain 2-like 0.00094
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|297527571|ref|YP_003669595.1|
Sequence length 285
Comment 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
Sequence
MSLTPTRQPIVPKIKHETIKKLLKQGERIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGN
TFVITGVKLEIGTPYSDRPNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRSLRE
PKAIRLEDLVVIPGKKVWLIFNDLYLIDHYGNIIDTGMLSTMLALNMTKIPRIVSIEDEN
VVIDKTVKEAPLPLNLNVVTVTLGIIDDIIIVDPNIDEELVVDSRITFAIDETNRIVGIQ
KMGMKGIKPKMIDQLVDIALKKASELHGLLREVLNNPNTYIKTLV
Download sequence
Identical sequences D7DAA0
WP_013143893.1.49614 gi|297527571|ref|YP_003669595.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]