SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for W01D2.2a from Caenorhabditis elegans WormBase WS218

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  W01D2.2a
Domain Number 1 Region: 29-104
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 8.87e-29
Family Nuclear receptor 0.00026
Further Details:      
 
Domain Number 2 Region: 173-403
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 3.41e-25
Family Nuclear receptor ligand-binding domain 0.0056
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: W01D2.2a   Protein: CE20124   Gene: WBGene00003651
Sequence length 412
Comment CE20124 WBGene00003651 locus:nhr-61 Zinc finger, C4 type (two domains) status:Confirmed UniProt:O62389 protein_id:CAB05636.1
Sequence
MIVDSISSSTASTSSSSPTRGTPIRKSLQCAVCGDVALGKHYGVNACNGCKGFFRRSIWK
NRTYACRHGGKCLVAKEQRNACRSCRLTRCLDVGMNPRAVQGDTVEDPEWDEEAMPETLS
ISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKLTYPGTYDFRYAFH
NTKVVSPRTPLTPTAERIATLNDVVADFRRAFVLFVDILKSIDQLRDVQEDDKMKIAKSR
FAAFYWWLCSTWSAKAGCNGVCYSNGSYHPASISDMPKSEGKHGVRIDYSGVSQKSLENL
VEPLRRMELSDEERIVGAVMVILADPVPNVSTKTEKILAEARDFYLELLGYCIKLPEEQQ
GIRVSTMVLLLASIMELVHLTTDNIQLSDVLHVIDLGDWSQELRDHRYRRQF
Download sequence
Identical sequences O62389
W01D2.2a W01D2.2A W01D2.2a.1 W01D2.2a.2 W01D2.2a.3 NP_001022381.1.50509

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]