SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Caenorhabditis elegans WormBase WS218 > ZK1151.1h

Domain assignment for ZK1151.1h from Caenorhabditis elegans WormBase WS218

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  ZK1151.1h
Domain Number 1 Region: 13-286
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 6.96e-81
Family Calponin-homology domain, CH-domain 0.00000955
Further Details:      
 
Domain Number 2 Region: 1471-1679
Classification Level Classification E-value
Superfamily Plakin repeat 6.41e-28
Family Plakin repeat 0.0034
Further Details:      
 
Domain Number 3 Region: 2852-3020
Classification Level Classification E-value
Superfamily Plakin repeat 1.13e-27
Family Plakin repeat 0.0033
Further Details:      
 
Domain Number 4 Region: 2454-2618
Classification Level Classification E-value
Superfamily Plakin repeat 1.4e-24
Family Plakin repeat 0.0036
Further Details:      
 
Domain Number 5 Region: 2204-2267,2324-2406
Classification Level Classification E-value
Superfamily Plakin repeat 2.44e-22
Family Plakin repeat 0.0061
Further Details:      
 
Domain Number 6 Region: 1803-1945
Classification Level Classification E-value
Superfamily Plakin repeat 7.98e-22
Family Plakin repeat 0.0082
Further Details:      
 
Domain Number 7 Region: 2699-2880
Classification Level Classification E-value
Superfamily Plakin repeat 2.88e-18
Family Plakin repeat 0.0097
Further Details:      
 
Domain Number 8 Region: 2996-3146
Classification Level Classification E-value
Superfamily Plakin repeat 6.02e-18
Family Plakin repeat 0.0024
Further Details:      
 
Domain Number 9 Region: 1909-2046,2090-2111
Classification Level Classification E-value
Superfamily Plakin repeat 8.02e-18
Family Plakin repeat 0.004
Further Details:      
 
Domain Number 10 Region: 1163-1281,1314-1340
Classification Level Classification E-value
Superfamily Spectrin repeat 1.44e-17
Family Spectrin repeat 0.012
Further Details:      
 
Domain Number 11 Region: 687-816,877-901
Classification Level Classification E-value
Superfamily Spectrin repeat 9.6e-17
Family Spectrin repeat 0.0079
Further Details:      
 
Domain Number 12 Region: 1707-1821
Classification Level Classification E-value
Superfamily Plakin repeat 0.000000000000497
Family Plakin repeat 0.02
Further Details:      
 
Domain Number 13 Region: 3238-3334
Classification Level Classification E-value
Superfamily Plakin repeat 0.0000000000288
Family Plakin repeat 0.0046
Further Details:      
 
Domain Number 14 Region: 293-401
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000000000326
Family Spectrin repeat 0.0029
Further Details:      
 
Domain Number 15 Region: 987-1080
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00000000393
Family Spectrin repeat 0.0085
Further Details:      
 
Domain Number 16 Region: 538-631
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00000017
Family Spectrin repeat 0.0067
Further Details:      
 
Weak hits

Sequence:  ZK1151.1h
Domain Number - Region: 810-867
Classification Level Classification E-value
Superfamily SH3-domain 0.00138
Family SH3-domain 0.0017
Further Details:      
 
Domain Number - Region: 1103-1195
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00576
Family Spectrin repeat 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: ZK1151.1h   Protein: CE39998   Gene: WBGene00006876
Sequence length 3424
Comment CE39998 WBGene00006876 locus:vab-10 status:Partially_confirmed UniProt:Q27GN8 protein_id:CAJ80823.1
Sequence 
MVGERYRSHHAVDPSDAQEKEVLDHYELNREKYNDERDNVQKKTFTKWVNKHLSKTDHKI
DDLFVDLRDGYALIALLEALTGERIQKENGYTRFHRIQNVQYCLDFLKKKNIKLVNIRPE
DIVEGNGKLTLGLIWTIILNFQVSVIRQRLLLESSQHEQMSAKHTTTNSQVSLHGSDATS
ARDALLQWARRVTAGYPRVNVNNFSSSWRDGLAFNAILHRYRSSAIDWNKISSDSVSNTE
RLNNAFAAADREFGVERLLDAEDVDTNNPDEKSIITYVSSLYNALPHEPEMSRLQKVQEE
YIEEAYEWREWVVRAIQLVDDRHLQGTASELIYELQRFREDDLPPREEQKRRLTLVYEHL
EKVMRSTELFAIPHELSAPELQRVWNELQNSIDRRFDVLERHRIQEGNSNDLLSRLARGI
GITNEKLDLILKRIEDVEARVDTSPPAAVERTVSEIVDDLNALESPIARFFEDVEELKSM
QHPEANDFYKQVYGLHQRRTTYLDRLTNQILVRLGVRTDSLHKENQQRLENMRKTSFSRV
EECIEWVRVRMEKLTTMEFLEDLETLEHVFEQHKFDNRDIQDFRQNVDECIARQAEVSAE
DTYEYCELLRVLESEYQQLRDLSAGRMLDLDSLIAFVRAAQLELIWVSERESIEVTRNWS
DIKQLDLPMLTNYYKQLLHEMELREKQYNDVHNQGAALLNQGHPAIRVIEVYLRQMQSQW
DWLLALSKCLEEHLRDALNLKSFMEEASDAEAWIQEQSVRLENNYNRTDFSLEEGERFLR
ELDEIKEILNKYHQVLMALTERCASISPLWQRGERIPHPIKVTALCDYSDENVTIKAGDD
VYLLDNSDLIKWTIRDISGAEGQVPSVVFRIPPTDARLTALLNRLLQQFEKLKKLWDKKH
RMVRFNMVLNTMRTIQGWDLDTFNSIDPDQRDAIMKALNDDANKLLSELDPNDPLALRLR
EELRRTNEHFWNLLNASQKPPEPDWASQYDQKMAELLKKLEEAWRELNDAVGKPISRSPE
DLERVIHAHKRFEDALQALDSDVANVKELFRQLPNPTPTQRVNHDRLNGLWDDLWDLSRM
YVERIKVLESVLNGMVEVADIVRQHEITLNSFDDLPAALDKLRGHHSQLLEINMVLKQQQ
TVIDQLNRNVALLRQHVSRTRINEGHHPDVDAIEDEVQKLNVRWENVNSQIASRLLAVES
ALQIQMVYRSEYETEMSWLDTVEETINRLRKPEELRPEQYQQQLDMLIAEYTNLQEHTQA
IEHVNKEGGRFIHEAKIFDAKLGQYSDGIVGIHGPGIKSEFRRTKPQPKNGSQIVTEELE
LLNRRFAQLSSLILERRNTMQVLIQNWKRQKQEEEDRRRAEEEEKRRAFEAARLKALEDA
ERLRREREDAEARRRAKDDADRARRMAEDAERARREAEEAERRRREEEERRRREAEDRKR
RQDEEDRRRREEEERRRREEEEKRRKKPDFDLKIQKPTMNIEPVVTSAGDEWEIVDPIGD
RAKISEVEDEMQTFAEETITNTQFYEMEGNLNKKTGEVLTFIEAIRQGNLTAAGQFFDIP
SASVMSLEEAAKYGLVEQDLPTVLNTTWGIHHPETRQPITLSEAIRIGLYDSNIRQFRDI
HTGEILSQSDLMSKGIANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRTTD
MELQLWAAIYHGYLSIENPEHVTTIGTSLTDAIENGFINANNAEFNDRNSNDSFKLRDAV
SKRTGLINNDVVEIVQMTDDEKKRVPLGAALVRNVIGVKDGKYTNLASRQSMSLKEAHQD
GLIGKALTLEEAAQNKLVDSSGYFVDRGILGQRYTLLEAIVAGLIDAEVRHIVDPNENDV
ISISEAMERGLLLPNGKIVLEKDEKEFTIPEAVHEGLLTKRVRHSIFNIRGIRNTETSQN
LSFNEAVEAGVIIPNAERVVDLQTQESFLITDDRAKNLIEVALHELLTTPVGIKNDRGAY
ELNLVRAVSSGIIDPVKGVFFNKNTKHELSTKEAYEQGFITLRGALKVFGLLNVPPALVT
PAKKLDRTRRIGRPGQEGGADGNHVTVTLQDAMRQGLVGNQRYVHGKVDLSLEEALNRGL
LDPNSQWIMPDQSKGDGPTIEEKTTETMTETGQQLAPKYFPDKNIEESVTTVKRVRTTET
TALGGPGGVSVYRSIAGGKGALEVPSRGYHIYEAERKGLIDLTNGKISAPNVDRVLSFAE
GIELGIIDATTIQVSTGGRSVSVKEALEKKIMESDGSVNGRNIEQAVEAKTIVIDAEPLV
PYNNQSKNIIQIPSGNGPIISFRQVGQPVVEESTQSWEFDTQQGVFVDNLTGEKLSLERA
LATGKVAPEDISVRDGLTGREMPLEEAEKWGIIDSKNRYYFDKSQNKRMSYTEAAQQHLM
YLTGGVPENASDAVHTTVKVQTRTAVAKKEALSSGLPLSDYSLGKALSLGWYDQSAGTFT
HPETQKQLTLKEAIMKGLFDPYDTTIVDKKAGKEISLLEAIREEIVDDNAGTVKDTQTGR
VHNFLEAGNLGLVKGKNFGDTLDSSLFSGRLDLGSGSYTRPSGGSSMPIHEAINRNYVDR
SSVSVRDPSSGQQYSYQEAVDRRIVDADRGLIHGGGDSTSFSQGLTSGHLVSSGSSRPTS
GNQSRLVEQRLQLTPFAPNGGAGRSRDGRHELVDLGGGQQVQVKVVRGEGGVEKGEYTDP
KSGMKFTIQMHGDPVVTETKTSVKSTSQVHSVELEPHAEFVGIDRVRDKRNNHVYSLEEA
RRLGLAKVDKKGKQMTRSYQAFRSNIDNAVNNGVVDSHNQKISLENAIHARIIDIRNLSY
HHPTHGSVDLKTAASQGLVDVTLSEVLPKGIIHPGTGERIDIKRGIELRIIDAATGKVRD
PRDNKTITWIDILKPVYQAIASEGVFDPTKGHHVPVTTALNDGLINASTGNYRNSITGED
VPLSDTVDRGLIDRSTYETITKPFFTDYRSNRKLNLVEAVRERLIDPKNRTIQLSRQSIV
PIAKAVQDGRIPMEIGEKLRKVDKLNFAEALGKGLIDSKQNVFTDPDTGRQMSIAQAIQE
GFIDTGSVQGIEGNDESNLFNVLQSSDFDETSGRIYDKKSSLHLTFNDAVRRGVIDGDSL
LHLQATGDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE
GVKRRDAEGYKFRISEYDDSQAQRQSVPKFRETVTVSKLTPQYNEPGLSVRMRQSTTSIG
DRASKFLEDPSQLAEIQQDFLSSLEAAQFDTDEKVIEHPHTRQRVSVREAAETGLLDVQT
GEIVNPDNGRRFSIPRAVHMKLVGGDAAKRIMEQLNMPVEEVAYATQTITSSTHRAPSPV
FATASVSQPSGGATTTREFTRTINWHGQPSELRNSQTDPLAAYTTVSSNVTESTEDAPAW
ARKQ
Download sequence
Identical sequences G5ECP9
ZK1151.1h ZK1151.1h NP_001040721.1.50509

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.