SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for C45E5.6c from Caenorhabditis elegans WormBase WS218

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  C45E5.6c
Domain Number 1 Region: 145-391
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 1.01e-37
Family Nuclear receptor ligand-binding domain 0.0028
Further Details:      
 
Domain Number 2 Region: 1-46
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000194
Family Nuclear receptor 0.0082
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GBrowse: C45E5.6c   Protein: CE29227   Gene: WBGene00003636
Sequence length 395
Comment CE29227 WBGene00003636 locus:nhr-46 status:Partially_confirmed UniProt:Q95QR3 protein_id:AAL02467.1
Sequence
MCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSKIERMPGNTCTVSAANGVS
HSSSAASASPEHKFSFSLSTIAPSTSTGSFSSGSQPAPIESTNSSGSEAEVLDRKLIQEN
QLTLFMVALEKQTEQLTDDDVKDNDVMGAWSRDITLTFGLQHPQMVIKRLPLKYSCDRIM
EAADLYLSWYRSFVFAADWAMGIPEFRVLPLADQTTLFKQNFMAFGWITFAYKCFELKQH
LTGMPLGNGAYIPYNDEDQKKLPERWAQTYGVVCRKLIDLIVKAMIELQITEEEYCLIKT
ISLFQQDCILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTRALKISLMLPSFS
HIGQVESTLITQLTAADLHQLSGVPMEICTAQTTL
Download sequence
Identical sequences Q95QR3
C45E5.6c.1 C45E5.6c.2 C45E5.6c.3 C45E5.6c.4 C45E5.6c.5 C45E5.6c.6 NP_500860.1.50509 C45E5.6c

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]