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Domain assignment for R17.3 from Caenorhabditis elegans WormBase WS218

Domain architecture


Domain assignment details

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Strong hits

Sequence:  R17.3
Domain Number 1 Region: 243-294
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000785
Family TSP-1 type 1 repeat 0.0031
Further Details:      
 
Domain Number 2 Region: 214-244
Classification Level Classification E-value
Superfamily Somatomedin B domain 0.00000418
Family Somatomedin B domain 0.0032
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: R17.3   Protein: CE16316   Gene: WBGene00011269
Sequence length 440
Comment CE16316 WBGene00011269 Thrombospondin type 1 domain status:Partially_confirmed UniProt:O18003 protein_id:CAB07269.1
Sequence
MRHFLFVSLVFSIPYTCHAGCYQRRLCCAGRNNTCKGVDDGIAHLPTVSTIHNEEAQTFH
QRPTVRTEKEYYTPHYESSGDGYDLIFPDVFDEESDERIGKLVLPDIIEMDGSGADKVYE
RYGLGSGDGEPEDVETQEIPLTTPAPRLKTLIFGLKRDQRTPPEEITRYSEKPRHLLIRY
SLLSKFMPLKVTSTPLLYEENRVQPANNLYYLESSISECYCDEHCVTLGDCCSDYTFVCP
PRDCVLTDWDSWTQCTADNGTCGIGTQKRLRHVIQHAERGGAACEPLKEMRTCFVECRPK
KSALDDITTVALILDYRHNKTRSKIRRNNIYWDLPNVAEKMKKATYYCVHYTIDWVNRNC
VSRLLNKGLSEGSVMCAECQPEATYHRNNGRCASDLEDGDQGFWKLIGPQSCNGIWTRIN
RTENCQCQIEYPKDHPFLLV
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Identical sequences O18003
R17.3 6239.R17.3 NP_499387.1.50509 R17.3 R17.3 R17.3

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