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  Home > Genomes > Caenorhabditis elegans 76_235 > R31.1b

Domain assignment for R31.1b from Caenorhabditis elegans 76_235

Domain architecture

Domain assignment details

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Strong hits

Sequence:  R31.1b
Domain Number 1 Region: 33-273
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 2.23e-84
Family Calponin-homology domain, CH-domain 0.0000113
Further Details:      
 
Domain Number 2 Region: 3659-3787
Classification Level Classification E-value
Superfamily PH domain-like 1.65e-32
Family Pleckstrin-homology domain (PH domain) 0.00089
Further Details:      
 
Domain Number 3 Region: 298-414
Classification Level Classification E-value
Superfamily Spectrin repeat 4.19e-29
Family Spectrin repeat 0.00014
Further Details:      
 
Domain Number 4 Region: 1509-1660
Classification Level Classification E-value
Superfamily Spectrin repeat 1.03e-27
Family Spectrin repeat 0.00067
Further Details:      
 
Domain Number 5 Region: 1302-1450
Classification Level Classification E-value
Superfamily Spectrin repeat 3.81e-27
Family Spectrin repeat 0.00097
Further Details:      
 
Domain Number 6 Region: 3316-3470
Classification Level Classification E-value
Superfamily Spectrin repeat 9.17e-24
Family Spectrin repeat 0.0019
Further Details:      
 
Domain Number 7 Region: 1875-1989
Classification Level Classification E-value
Superfamily Spectrin repeat 6e-23
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 8 Region: 2996-3147
Classification Level Classification E-value
Superfamily Spectrin repeat 9.03e-23
Family Spectrin repeat 0.0016
Further Details:      
 
Domain Number 9 Region: 3149-3262
Classification Level Classification E-value
Superfamily Spectrin repeat 1.32e-22
Family Spectrin repeat 0.0016
Further Details:      
 
Domain Number 10 Region: 1731-1874
Classification Level Classification E-value
Superfamily Spectrin repeat 1.44e-22
Family Spectrin repeat 0.0023
Further Details:      
 
Domain Number 11 Region: 701-810
Classification Level Classification E-value
Superfamily Spectrin repeat 3.96e-22
Family Spectrin repeat 0.0011
Further Details:      
 
Domain Number 12 Region: 2696-2829
Classification Level Classification E-value
Superfamily Spectrin repeat 1.44e-21
Family Spectrin repeat 0.00029
Further Details:      
 
Domain Number 13 Region: 2039-2192
Classification Level Classification E-value
Superfamily Spectrin repeat 2.55e-20
Family Spectrin repeat 0.0048
Further Details:      
 
Domain Number 14 Region: 2571-2726
Classification Level Classification E-value
Superfamily Spectrin repeat 3.53e-20
Family Spectrin repeat 0.0016
Further Details:      
 
Domain Number 15 Region: 2893-3043
Classification Level Classification E-value
Superfamily Spectrin repeat 1.1e-19
Family Spectrin repeat 0.0013
Further Details:      
 
Domain Number 16 Region: 2411-2514
Classification Level Classification E-value
Superfamily Spectrin repeat 3.24e-19
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 17 Region: 494-629
Classification Level Classification E-value
Superfamily Spectrin repeat 1.02e-18
Family Spectrin repeat 0.0022
Further Details:      
 
Domain Number 18 Region: 416-527
Classification Level Classification E-value
Superfamily Spectrin repeat 6.15e-18
Family Spectrin repeat 0.00037
Further Details:      
 
Domain Number 19 Region: 2300-2415
Classification Level Classification E-value
Superfamily Spectrin repeat 8.51e-17
Family Spectrin repeat 0.0023
Further Details:      
 
Domain Number 20 Region: 1207-1331
Classification Level Classification E-value
Superfamily Spectrin repeat 9.71e-17
Family Spectrin repeat 0.00075
Further Details:      
 
Domain Number 21 Region: 1084-1209
Classification Level Classification E-value
Superfamily Spectrin repeat 4.61e-16
Family Spectrin repeat 0.0035
Further Details:      
 
Domain Number 22 Region: 2192-2309
Classification Level Classification E-value
Superfamily Spectrin repeat 6.19e-16
Family Spectrin repeat 0.0014
Further Details:      
 
Domain Number 23 Region: 937-1036
Classification Level Classification E-value
Superfamily Spectrin repeat 9.12e-16
Family Spectrin repeat 0.002
Further Details:      
 
Domain Number 24 Region: 2810-2900
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000000000000432
Family Spectrin repeat 0.0019
Further Details:      
 
Domain Number 25 Region: 634-736
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000000000000288
Family Spectrin repeat 0.00097
Further Details:      
 
Domain Number 26 Region: 824-888
Classification Level Classification E-value
Superfamily SH3-domain 0.0000000000144
Family SH3-domain 0.0015
Further Details:      
 
Weak hits

Sequence:  R31.1b
Domain Number - Region: 3468-3535
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000417
Family Spectrin repeat 0.0048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: R31.1b   Gene: WBGene00004855   Transcript: R31.1b
Sequence length 4063
Comment pep:known chromosome:WBcel235:V:11901108:11916610:1 gene:WBGene00004855 transcript:R31.1b gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MRKYEMQVRVPTSGAPPVRADANGTDQDEFNNETLYFERSRIRTLQDERVHIQKKTFTKW
CNSFLNRASLEIVDLFEDVGDGIMLMKLLEIISGDKLGKPNRGRMRVQKVENLNKVLDFL
KKKKIQLENIGAEDILDRNERLILGLIWTIILRFQIDTIVIEDEEERGERKHAKDALLLW
CQRKTAGYPNVRIENFTTSWRNGLAFNALIHSHRPDLVDFNRLNPNEHVDNLNHAFDVAE
KKLEIARLLDAEDVDVTRPDEKSIITYVSLYYHHFAKQKTEMTGARRIANIVGKLMVSET
MEDDYEHIASELLNWIRVTIKTLESRRFPNSLNGMREEHAKFNQFRTSEKPPKYKEKGEL
EALFFTIQTKRKAMSRKQYQPPQGLFMHDIESAWAQLDYAENERQVAIIAELQRQEKLEQ
LAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSASQVEKTLKKQQAISTDILAREDRFKMLT
AMCNELCTEKYHESDKVRGMEREIIDRWTQLLTLLEQRKRALMSLNDLMSLLRDIDTLSN
ELYSLEPAVRNRDVGKHLIGVEDLLGKHDLLDAQINAHGSLLSKLSQSANNYIRHKEEQF
DVLQRKLDEVTAQYNTLVELCRSRRLGLERARSLFQFVQDHEEEMAWLAEKEKLCTTALN
SGDISAVPQTTLLYKNVEMEMQTHWARSKGMIAGGERLVQNGQSKEDIQRRLTQMNHRWE
RLRVAVDALGNWLSEARHAQQYFQDANEAESWIREKMPLVKSDDLGRDEGAAESLLQRHA
RLEEEIRAYKSDISRLEEMQSQLANSAFHTATTSQSVQETEEVNVPQVEMSYNYEGNGMR
VSKGEVLALLEKSTPEWWRALKRDGTEGYVPANYCKIVPGETVTVTQTTQKTTTTLEGNE
TKSSVVADRQHKISNDYRELKRLADVRRRLLSDNIKLLRFYRECDEFERWAKEIEVSLAD
EPSPEHVAAFRRKFDKLEADMKTNGGTQLKHINDIANDLISEGHGQSRKIEVRQHKINAM
WDNLERLRKQRGVRLEATERVADFDTTCESAREWMLSKFEQLDRNPNDVKSLQNLERDLK
PLEDKIAALEKLAAAVKKDHPEEAAAIERKIAELRALHADLLRRAQEKMLLAEQTQGKEM
FESALRDMIGWIEKTRKVMMEDVHPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELGR
RLLERNPRMSKVEEQLQNLVSEMASLRDLYRRRDTILKQQLDLQLFNRESERIDAATKGH
EAFLEFDNLGDSVESVENLLKRHRDLEAKLDAQEARLEAFSRTADDMIKAQHADSAYIEQ
RRRDVLARREAVRRAAAQRKKQLEASLEYQEMRREADEVVGWMYEKAKLVMSGDDSALAP
SAIPHRLLKHEAFEAEIIANEPRIQQINSEGDGLVSKKHYESPNVEKIVRQVNAQWGDLK
KQVWNKGLRLRQAADQKGLDRILEDAHAKLDEMQTALNSKDQGLDLRSVKDLLQKHAVLE
QEMGLYGNKLSDIENRGKKMAVDGHYDADRIHSTVGQLLQRYAAMKGPAQRRKGDLDESR
LWHQLVFDVDCELQWIAEKKPIASSQDCGRTLTEALNMVKKQEQLEAEVNQHGGQIDKVL
LQAGELIKRHHSASSQIKAKSSELETAWSELKKLLRLRRAVVDWGVKEQQYLFDAAEVES
WMNEKRNALASEDYGNDEDAARKLLSKHRALCEDMTTYRQWLEKLEVKCVELVESNRPHV
ERFQKRQDELVREFDALSKLAEDRRNALEDAVCLYEYMRESADLGQSIEENLRVAMSEEF
AEDYEHLKELQSKFDEFKQKVKNGSERFTSCETAANAILRRNPPFARDVVKKQEALRTAW
NTLCEYIEARDSKLAVAEELHRFHRDVDEFEQWMADKMANMPRDLGRDVKHVHSLWQHHE
ALDKEIHNSQPRLAKLVEEAERLKKTYPGGNAEQIGGRQQTLEQEWEELKNATDDRKDML
RAAFDLHTFNGKVRDLLAWTDLTISDIQSDLHINDLQQAEWLQTEHSRLSHEMDAREPEF
ARLVNDGEKMITAQHYASEEIKNKTHLLKSALERLRSEWALRNGFLSQAVQWHAFQREAK
QIIASIGSKRTTLRSLAVGGSVADVESQTKRLDTFEKALSTLDERTATLDHTANELMKAR
HMESKNISMWQSNVHEELKLLRQDIEARHAMLKDAFALASFDSDVAQIEAWIDEKTNGVR
KAQDLSSESISIDEKMKRLQTHQALEAEVTANKPVVDQILQRGNQLKNLHRNPKIANRCD
ELSYKWNQLSGACADQSLALEEARDLLRFKQLVENVLAWINEKEVLVSTADMGKDMEHCR
LLLERLDGTRSDSIVDEQTLDEINRLGEKLVKQGRSSRDQVQKEQQHLNEKWRLLLGQLA
HYRTELLAAMEVHTFNRDVEDTDERIHEKVAAMKSDDYGKDFASVELLVRKQSALERDMS
AIHQKLIAHDKDAQKILEKRPPLRETVLDSLKKLEESWEQLSKAAELRNEKLNRSFKLYK
YLDDVKKVEQWANQVRNKMTSHQTPKDSNGARKILEQHHERKAEIDGRSEELRLLHEEGQ
ALNQEQPEHKAEVQRAHKRVQNSEHQLRQTWESEKGTLQKLLEWMLWCDEAVQCEQWLSD
KETQVARGELGDTTDAVEMLIKGHSAFEETVRKQSEKIDALTKNADALVSGGNNYRADIV
TRSEEVTARHALLLKSMEKRGHMLEDSKKYHEFIRQCGELIIWITAKLQLAYDESFLDHT
NLRSKLQKHMAFDSELVENEKRLSTVERQGEQLVTDNHFMSEQVKAQLVELRSGWDELRT
KSALKTQRLREAFELHSLQRKVEDIEKWLDKVEGELSSDDHGRDILSTELLIKKLDTLQT
EIAGRSDAVVEMMKKARELRVQGSAAADDCLKQAEQVEARYSGLDEPVQIRRENLVDAQA
FFQWVKAAEEDLEWLSDRMMLASSGESGDSLQSALSLQKKHATLEKELDTRQSAMNDTEQ
RGKDMIRQRHFASTHIQKILDRLSSAMLTLKESCGLRRDLLQEAIDAHEYYTEETEAEQW
LREQMPLAMSQEMGRDQAGAESHLRRLTVLDKEVELFKNEIDRLKKRADGLLAREHHDAM
SIAAKQRKLEALFGDLCRECARRRTQIVDASKYHKFVRQADDLSDWLREKERSASAEDYG
QDLEDCQQIIEQFESTVRELAAAGERVAAVQRAQEDLLRSGHPYGASITAKGADVQRLWT
HVNEVANERKQALNGARQVHRFDQEADQILNWLQDKEATGVAMEQEDLSRADLASVKAQL
QRHDEFMHGMKAVEKQVAELCHEAERLWNSFPDTRHHLEVRRLDMEEQLKDILEAAKKHL
EKLRHMQSLQSYFQEYREMMQWMKNMQSTMTSEQLPRDVASCESLVRRHDEYNLEMQGRK
PFVDDFARQGRRMIQSSHVLSQEIQEKVDILEKSWAMLCEIWKDRAELYEENMDVQKWKQ
NAEQLDSWLEERAGLLGDDWRMVDSVEMAETHLRDFDDFLVTLEAQSEKCDMVKRLTLVE
QNFSRLRSKEIDRARIAEDDQKRRDTIKIVEKGNILANRRQERERRKTQEISLLRPSPSG
EEFSTHTMPRKERKDRAKTTADLAPGAIQIGDILASSSTVAPLQSGVEMTKTPSFNTRRT
QSIRKGSRWEDMGAIDMKGFFDRKQCQQSGGKRATIRSWKNYYGILCGQLLCFFKDEQQF
LENVAAAPPVYIYGAQCEQYPEYAKRKNSFRLLLQDGSEFIFSCPDERQMLEWVAKIKFH
AHLTPSNQLKSYAYNDDLFQSPDQPPMVAPRRNIGGHDVANRMSHASSVFTTSDDLEQHE
LDYSRRCSSLPRGKHSGQITMRDCATLPRGFGSDVMEQQPTAFFPPSGPLLATPSVLTMS
SSSMTANVMPTVVTRKIGVVRRASRRQSVYAESIYGEVEQAIAEANRVSTSRPNGDHAEL
RHTIQVHPGSSGYTETLMYKEHTSSNYQPMERSVSPRNQQNGEFITWVESNQQNQPMNTP
DGRSTSASVVSTPSNYDDSDSIKSSSKRKGFGSLFKRGSKHSK
Download sequence
Identical sequences G5EC35
R31.1b NP_001129903.1.50509 R31.1b

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.