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  Home > Genomes > Caenorhabditis elegans 76_235 > R31.1c

Domain assignment for R31.1c from Caenorhabditis elegans 76_235

Domain architecture

Domain assignment details

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Strong hits

Sequence:  R31.1c
Domain Number 1 Region: 1-193
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 1.18e-66
Family Calponin-homology domain, CH-domain 0.00000959
Further Details:      
 
Domain Number 2 Region: 3576-3704
Classification Level Classification E-value
Superfamily PH domain-like 1.63e-32
Family Pleckstrin-homology domain (PH domain) 0.00089
Further Details:      
 
Domain Number 3 Region: 215-331
Classification Level Classification E-value
Superfamily Spectrin repeat 4.06e-29
Family Spectrin repeat 0.00014
Further Details:      
 
Domain Number 4 Region: 1426-1577
Classification Level Classification E-value
Superfamily Spectrin repeat 1.08e-27
Family Spectrin repeat 0.00067
Further Details:      
 
Domain Number 5 Region: 1215-1367
Classification Level Classification E-value
Superfamily Spectrin repeat 2.64e-27
Family Spectrin repeat 0.00097
Further Details:      
 
Domain Number 6 Region: 2593-2746
Classification Level Classification E-value
Superfamily Spectrin repeat 1.96e-24
Family Spectrin repeat 0.00029
Further Details:      
 
Domain Number 7 Region: 3233-3387
Classification Level Classification E-value
Superfamily Spectrin repeat 9.17e-24
Family Spectrin repeat 0.0019
Further Details:      
 
Domain Number 8 Region: 1792-1906
Classification Level Classification E-value
Superfamily Spectrin repeat 5.88e-23
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 9 Region: 2913-3064
Classification Level Classification E-value
Superfamily Spectrin repeat 8.04e-23
Family Spectrin repeat 0.0016
Further Details:      
 
Domain Number 10 Region: 3066-3179
Classification Level Classification E-value
Superfamily Spectrin repeat 1.2e-22
Family Spectrin repeat 0.0016
Further Details:      
 
Domain Number 11 Region: 1648-1791
Classification Level Classification E-value
Superfamily Spectrin repeat 1.51e-22
Family Spectrin repeat 0.0023
Further Details:      
 
Domain Number 12 Region: 618-727
Classification Level Classification E-value
Superfamily Spectrin repeat 3.84e-22
Family Spectrin repeat 0.0011
Further Details:      
 
Domain Number 13 Region: 2488-2643
Classification Level Classification E-value
Superfamily Spectrin repeat 3.6e-20
Family Spectrin repeat 0.0016
Further Details:      
 
Domain Number 14 Region: 1124-1260
Classification Level Classification E-value
Superfamily Spectrin repeat 1.83e-19
Family Spectrin repeat 0.00064
Further Details:      
 
Domain Number 15 Region: 2328-2431
Classification Level Classification E-value
Superfamily Spectrin repeat 3.24e-19
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 16 Region: 411-546
Classification Level Classification E-value
Superfamily Spectrin repeat 9.93e-19
Family Spectrin repeat 0.0022
Further Details:      
 
Domain Number 17 Region: 2810-2949
Classification Level Classification E-value
Superfamily Spectrin repeat 5.94e-18
Family Spectrin repeat 0.0017
Further Details:      
 
Domain Number 18 Region: 333-444
Classification Level Classification E-value
Superfamily Spectrin repeat 6.02e-18
Family Spectrin repeat 0.00037
Further Details:      
 
Domain Number 19 Region: 1959-2086
Classification Level Classification E-value
Superfamily Spectrin repeat 1.3e-17
Family Spectrin repeat 0.0066
Further Details:      
 
Domain Number 20 Region: 2217-2332
Classification Level Classification E-value
Superfamily Spectrin repeat 8.24e-17
Family Spectrin repeat 0.0023
Further Details:      
 
Domain Number 21 Region: 2065-2186
Classification Level Classification E-value
Superfamily Spectrin repeat 3.66e-16
Family Spectrin repeat 0.0031
Further Details:      
 
Domain Number 22 Region: 1001-1126
Classification Level Classification E-value
Superfamily Spectrin repeat 4.47e-16
Family Spectrin repeat 0.0035
Further Details:      
 
Domain Number 23 Region: 854-953
Classification Level Classification E-value
Superfamily Spectrin repeat 9e-16
Family Spectrin repeat 0.002
Further Details:      
 
Domain Number 24 Region: 2727-2817
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000000000000432
Family Spectrin repeat 0.0019
Further Details:      
 
Domain Number 25 Region: 551-653
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000000000000288
Family Spectrin repeat 0.00097
Further Details:      
 
Domain Number 26 Region: 741-805
Classification Level Classification E-value
Superfamily SH3-domain 0.0000000000144
Family SH3-domain 0.0015
Further Details:      
 
Weak hits

Sequence:  R31.1c
Domain Number - Region: 3385-3452
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000403
Family Spectrin repeat 0.0048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: R31.1c   Gene: WBGene00004855   Transcript: R31.1c
Sequence length 3980
Comment pep:known chromosome:WBcel235:V:11901993:11916623:1 gene:WBGene00004855 transcript:R31.1c gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MLMKLLEIISGDKLGKPNRGRMRVQKVENLNKVLDFLKKKKIQLENIGAEDILDRNERLI
LGLIWTIILRFQIDTIVIEDEEERGERKHAKDALLLWCQRKTAGYPNVRIENFTTSWRNG
LAFNALIHSHRPDLVDFNRLNPNEHVDNLNHAFDVAEKKLEIARLLDAEDVDVTRPDEKS
IITYVSLYYHHFAKQKTEMTGARRIANIVGKLMVSETMEDDYEHIASELLNWIRVTIKTL
ESRRFPNSLNGMREEHAKFNQFRTSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQPPQ
GLFMHDIESAWAQLDYAENERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVL
EEMEHGRSASQVEKTLKKQQAISTDILAREDRFKMLTAMCNELCTEKYHESDKVRGMERE
IIDRWTQLLTLLEQRKRALMSLNDLMSLLRDIDTLSNELYSLEPAVRNRDVGKHLIGVED
LLGKHDLLDAQINAHGSLLSKLSQSANNYIRHKEEQFDVLQRKLDEVTAQYNTLVELCRS
RRLGLERARSLFQFVQDHEEEMAWLAEKEKLCTTALNSGDISAVPQTTLLYKNVEMEMQT
HWARSKGMIAGGERLVQNGQSKEDIQRRLTQMNHRWERLRVAVDALGNWLSEARHAQQYF
QDANEAESWIREKMPLVKSDDLGRDEGAAESLLQRHARLEEEIRAYKSDISRLEEMQSQL
ANSAFHTATTSQSVQETEEVNVPQVEMSYNYEGNGMRVSKGEVLALLEKSTPEWWRALKR
DGTEGYVPANYCKIVPGETVTVTQTTQKTTTTLEGNETKSSVVADRQHKISNDYRELKRL
ADVRRRLLSDNIKLLRFYRECDEFERWAKEIEVSLADEPSPEHVAAFRRKFDKLEADMKT
NGGTQLKHINDIANDLISEGHGQSRKIEVRQHKINAMWDNLERLRKQRGVRLEATERVAD
FDTTCESAREWMLSKFEQLDRNPNDVKSLQNLERDLKPLEDKIAALEKLAAAVKKDHPEE
AAAIERKIAELRALHADLLRRAQEKMLLAEQTQGKEMFESALRDMIGWIEKTRKVMMEDV
HPVDVAEAEELLKKHYELGEQIKDKKYEVEYCQELGRRLLERNPRMSKVEEQLQNLVSEM
ASLRDLYRRRDTILKQQLDLQLFNRESERIDAATKGHEAFLEFDNLGDSVESVENLLKRH
RDLEAKLDAQEARLEAFSRTADDMIKAQHADSAYIEQRRRDVLARREAVRRAAAQRKKQL
EASLEYQEMRREADEVVGWMYEKAKLVMSGDDSALAPSAIPHRLLKHEAFEAEIIANEPR
IQQINSEGDGLVSKKHYESPNVEKIVRQVNAQWGDLKKQVWNKGLRLRQAADQKGLDRIL
EDAHAKLDEMQTALNSKDQGLDLRSVKDLLQKHAVLEQEMGLYGNKLSDIENRGKKMAVD
GHYDADRIHSTVGQLLQRYAAMKGPAQRRKGDLDESRLWHQLVFDVDCELQWIAEKKPIA
SSQDCGRTLTEALNMVKKQEQLEAEVNQHGGQIDKVLLQAGELIKRHHSASSQIKAKSSE
LETAWSELKKLLRLRRAVVDWGVKEQQYLFDAAEVESWMNEKRNALASEDYGNDEDAARK
LLSKHRALCEDMTTYRQWLEKLEVKCVELVESNRPHVERFQKRQDELVREFDALSKLAED
RRNALEDAVCLYEYMRESADLGQSIEENLRVAMSEEFAEDYEHLKELQSKFDEFKQKVKN
GSERFTSCETAANAILRRNPPFARDVVKKQEALRTAWNTLCEYIEARDSKLAVAEELHRF
HRDVDEFEQWMADKMANMPRDLGRDVKHVHSLWQHHEALDKEIHNSQPRLAKLVEEAERL
KKTYPGGNAEQIGGRQQTLEQEWEELKNATDDRKDMLRAAFDLHTFNGKVRDLLAWTDLT
ISDIQSDLHINDLQQAEWLQTEHSRLSHEMDAREPEFARLVNDGEKMITAQHYASEEIKN
KTHLLKSALERLRSEWALRNGFLSQAVQWHAFQREAKQIIASIGSKRTTLRSLAVGGSVA
DVESQTKRLDTFEKALSTLDERTATLDHTANELMKARHMESKNISMWQSNVHEELKLLRQ
DIEARHAMLKDAFALASFDSDVAQIEAWIDEKTNGVRKAQDLSSESISIDEKMKRLQTHQ
ALEAEVTANKPVVDQILQRGNQLKNLHRNPKIANRCDELSYKWNQLSGACADQSLALEEA
RDLLRFKQLVENVLAWINEKEVLVSTADMGKDMEHCRLLLERLDGTRSDSIVDEQTLDEI
NRLGEKLVKQGRSSRDQVQKEQQHLNEKWRLLLGQLAHYRTELLAAMEVHTFNRDVEDTD
ERIHEKVAAMKSDDYGKDFASVELLVRKQSALERDMSAIHQKLIAHDKDAQKILEKRPPL
RETVLDSLKKLEESWEQLSKAAELRNEKLNRSFKLYKYLDDVKKVEQWANQVRNKMTSHQ
TPKDSNGARKILEQHHERKAEIDGRSEELRLLHEEGQALNQEQPEHKAEVQRAHKRVQNS
EHQLRQTWESEKGTLQKLLEWMLWCDEAVQCEQWLSDKETQVARGELGDTTDAVEMLIKG
HSAFEETVRKQSEKIDALTKNADALVSGGNNYRADIVTRSEEVTARHALLLKSMEKRGHM
LEDSKKYHEFIRQCGELIIWITAKLQLAYDESFLDHTNLRSKLQKHMAFDSELVENEKRL
STVERQGEQLVTDNHFMSEQVKAQLVELRSGWDELRTKSALKTQRLREAFELHSLQRKVE
DIEKWLDKVEGELSSDDHGRDILSTELLIKKLDTLQTEIAGRSDAVVEMMKKARELRVQG
SAAADDCLKQAEQVEARYSGLDEPVQIRRENLVDAQAFFQWVKAAEEDLEWLSDRMMLAS
SGESGDSLQSALSLQKKHATLEKELDTRQSAMNDTEQRGKDMIRQRHFASTHIQKILDRL
SSAMLTLKESCGLRRDLLQEAIDAHEYYTEETEAEQWLREQMPLAMSQEMGRDQAGAESH
LRRLTVLDKEVELFKNEIDRLKKRADGLLAREHHDAMSIAAKQRKLEALFGDLCRECARR
RTQIVDASKYHKFVRQADDLSDWLREKERSASAEDYGQDLEDCQQIIEQFESTVRELAAA
GERVAAVQRAQEDLLRSGHPYGASITAKGADVQRLWTHVNEVANERKQALNGARQVHRFD
QEADQILNWLQDKEATGVAMEQEDLSRADLASVKAQLQRHDEFMHGMKAVEKQVAELCHE
AERLWNSFPDTRHHLEVRRLDMEEQLKDILEAAKKHLEKLRHMQSLQSYFQEYREMMQWM
KNMQSTMTSEQLPRDVASCESLVRRHDEYNLEMQGRKPFVDDFARQGRRMIQSSHVLSQE
IQEKVDILEKSWAMLCEIWKDRAELYEENMDVQKWKQNAEQLDSWLEERAGLLGDDWRMV
DSVEMAETHLRDFDDFLVTLEAQSEKCDMVKRLTLVEQNFSRLRSKEIDRARIAEDDQKR
RDTIKIVEKGNILANRRQERERRKTQEISLLRPSPSGEEFSTHTMPRKERKDRAKTTADL
APGAIQIGDILASSSTVAPLQSGVEMTKTPSFNTRRTQSIRKGSRWEDMGAIDMKGFFDR
KQCQQSGGKRATIRSWKNYYGILCGQLLCFFKDEQQFLENVAAAPPVYIYGAQCEQYPEY
AKRKNSFRLLLQDGSEFIFSCPDERQMLEWVAKIKFHAHLTPSNQLKSYAYNDDLFQSPD
QPPMVAPRRNIGGHDVANRMSHASSVFTTSDDLEQHELDYSRRCSSLPRGKHSGQITMRD
CATLPRGFGSDVMEQQPTAFFPPSGPLLATPSVLTMSSSSMTANVMPTVVTRKIGVVRRA
SRRQSVYAESIYGEVEQAIAEANRVSTSRPNGDHAELRHTIQVHPGSSGYTETLMYKEHT
SSNYQPMERSVSPRNQQNGEFITWVESNQQNQPMNTPDGRSTSASVVSTPSNYDDSDSIK
SSSKRKGFGSLFKRGSKHSK
Download sequence
Identical sequences G5EG97
R31.1c NP_001256382.1.50509

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.