SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for W01D2.2b.3 from Caenorhabditis elegans 76_235

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  W01D2.2b.3
Domain Number 1 Region: 29-104
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 9.07e-29
Family Nuclear receptor 0.00026
Further Details:      
 
Domain Number 2 Region: 173-406
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 1.13e-24
Family Nuclear receptor ligand-binding domain 0.008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: W01D2.2b.3   Gene: WBGene00003651   Transcript: W01D2.2b.3
Sequence length 415
Comment pep:known chromosome:WBcel235:II:14816169:14823419:-1 gene:WBGene00003651 transcript:W01D2.2b.3 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MIVDSISSSTASTSSSSPTRGTPIRKSLQCAVCGDVALGKHYGVNACNGCKGFFRRSIWK
NRTYACRHGGKCLVAKEQRNACRSCRLTRCLDVGMNPRAVQGDTVEDPEWDEEAMPETLS
ISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKLTYPGTYDFRYAFH
NTKVVSPRTPLTPTAERIATLNDVVADFRRAFVLFVDILKSIDQLRDVQEDDKMKIAKSR
FAAFYWWLCSTWSAKAGCNGVCYSNGSYHPASISDMPKSEGKHGVRIEYVDYSGVSQKSL
ENLVEPLRRMELSDEERIVGAVMVILADPVPNVSTKTEKILAEARDFYLELLGYCIKLPE
EQQGIRVSTMVLLLASIMELVHLTTDNIQLSDVLHVIDLGDWSQELRDHRYRRQF
Download sequence
Identical sequences W01D2.2a.2 W01D2.2b.1 W01D2.2b.2 W01D2.2b.3 NP_001022382.1.50509 6239.W01D2.2b W01D2.2b

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]