SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for C47F8.8 from Caenorhabditis elegans 76_235

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  C47F8.8
Domain Number 1 Region: 10-89
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 1.22e-21
Family Nuclear receptor 0.00095
Further Details:      
 
Domain Number 2 Region: 135-345
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 1.46e-18
Family Nuclear receptor ligand-binding domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: C47F8.8   Gene: WBGene00003671   Transcript: C47F8.8
Sequence length 347
Comment pep:known chromosome:WBcel235:I:12328100:12329508:-1 gene:WBGene00003671 transcript:C47F8.8 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGLISKNRGPCQVCHNTETTRRHFGIISCTACAAFFRRSIGMQYLCTAENRCTISFDRKF
FCRACRYASCLKAGMKLELIRKQKNNIYLRFPDAASNQQNLVRDSMSPATSEGGQSSSSK
TDEESDDPEYSKILKMYHDDLLQYYVKEVKKMMAEKRRGCEKNTLQIKTISDLMLITARQ
SGPSMEECLRCPGVDMLEKEDVEALLRYYRFSNIWVDSVLIDSVLESAKGDSHTDTDDRL
SRFIQEVKSTLGSSLAHLNLNIYEFAAFKALCIWKLRFYETSFAQKIIAHEHYEGVTGAL
RNYYENCTELADMEIAIRIGDITLQIVTVQNTYHEMVRLYYQIGMPL
Download sequence
Identical sequences O62116
C47F8.8 C47F8.8 6239.C47F8.8 C47F8.8 C47F8.8 NP_493118.2.50509

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]