SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for C56E10.4a from Caenorhabditis elegans 76_235

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  C56E10.4a
Domain Number 1 Region: 55-101,160-355
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 3.11e-27
Family Nuclear receptor ligand-binding domain 0.0074
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: C56E10.4a   Gene: WBGene00003727   Transcript: C56E10.4a
Sequence length 363
Comment pep:known chromosome:WBcel235:X:6661793:6665775:-1 gene:WBGene00003727 transcript:C56E10.4a gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MWQKCPRQKHLGFDIRDQSEFVEQMALSVFVLFFLIVLFPEQGFMCFVSGARIKCRSCRL
DRCLQQGMRKEAVTSGIVGNEEKVAPQTAYLASISLPSTSTAIPKVTETASCLRQTLRLI
TKFRKCNIIVEKIDLHISALLTMPSFLDNLNNYQEETDFKRDLPEWCTIDLLCAIEFAKK
LPDLSKFSDSDKEELIRNSCFTIAIAIEAIESYFDKKKTVVMPDGTDVMQSLANSGSVIH
AVFTQMFVCILDPLHRESFTIDELVLTLQLLFFTIAAPENLTPEGKEQLEKSVKSSMHCL
MVLLITQNTTNFSARYGSLIALNETFIKTAHAHKQKMKEAEHSRQKFRDFLIEQCVFDYR
PAK
Download sequence
Identical sequences G5EEX1
C56E10.4a NP_001024505.1.50509 C56E10.4 C56E10.4a

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]