SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for F11A1.3d from Caenorhabditis elegans 76_235

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  F11A1.3d
Domain Number 1 Region: 81-164
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 6.32e-26
Family Nuclear receptor 0.00019
Further Details:      
 
Domain Number 2 Region: 328-363,505-716
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 6.16e-18
Family Nuclear receptor ligand-binding domain 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: F11A1.3d   Gene: WBGene00000908   Transcript: F11A1.3d
Sequence length 719
Comment pep:known chromosome:WBcel235:X:10659339:10666869:1 gene:WBGene00000908 transcript:F11A1.3d gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MADNLLSSQNYINWTMLNKFYGKPQMSTPDDPVIHSPPSIGAAPGMNGYHGSGVKLEESS
GACGSPDDGLLDSSEESRRRQKTCRVCGDHATGYNFNVITCESCKAFFRRNALRPKEFKC
PYSEDCEINSVSRRFCQKCRLRKCFTVGMKKEWILNEEQLRRRKNSRLNNTGTCNKRSQP
GNQQSPQGPNQQPHLSPHHPGVAIYPPQPQRPLTINPMDNQMMHHMQANRPNAMPQLISP
PGAQPYPLTSPVGSSASDSPPNRSLTMMHNGEKSPDGYDPNIMAHRAPPPSFNNRPKMDS
GQVVLSTEEYKQLLSRIPGAQVPGLMNEEEPINKRAAYNCNGHPMPAETTPPYSAPMSDM
SLSRHNSTSSGTEKNHMTHSTVSAIPGNSAQNHFDIASFGMGIVTATGGGDAAEEMYKRM
NMFYENCIQSALDSPENQEPKPQEAMIPKEEYMTPTHGFQYQSDPYQVPPAERNINYQLN
AAELKALDAVREAFYGMDDPMEQGRQMQSFLKANKTPADIMNIMDVTMRRFVKVAKGVPA
FREVSQEGKFSLLKGGMIEMLTVRGVTRYDASTNSFKTPTIKGQNVSVNVDDMFAKLNAN
AQAQKAKCLEFFGFFDEEIKKNELAVYLVMLAVLFSVRSDPPMNENDVRIVTERHNHFMS
LLNRYLESLFGEQARRIFERIPKALGLLNEIARNAGMLFMGTVRSGEAEELPGEFFKIK
Download sequence
Identical sequences F11A1.3d NP_001041239.1.50509 F11A1.3d

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]