SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for W05B5.3a from Caenorhabditis elegans 76_235

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  W05B5.3a
Domain Number 1 Region: 111-199
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 5.5e-28
Family Nuclear receptor 0.0000588
Further Details:      
 
Domain Number 2 Region: 211-417
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 3.8e-17
Family Nuclear receptor ligand-binding domain 0.0019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: W05B5.3a   Gene: WBGene00003675   Transcript: W05B5.3a
Sequence length 514
Comment pep:known chromosome:WBcel235:I:13056091:13062122:-1 gene:WBGene00003675 transcript:W05B5.3a gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MDLSTSGSLPCHLPLSLLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFRPVVPKSLMN
PQPAMDTFYMSAIQSLVVSTTNDDQYSEHGALEGSKSLAKDENASTSAGTILCQVCSDKA
SGFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMS
RDAVRFGRVPKREKARMFEEMQKTNVQSQRDQIAIQYENLTEVMHKINQAFGTLQATLEK
CTGPIYTDRCPITSNFIVIPLKAAIDFANSIPAFLSITQTQRVHLLQNSVFDVMLLASAS
ASTSQHFPPGGLTYDQSSANPIIPQAIQSISARIRQLPPQTVPILTAIAVCQADLLPESQ
QPMLLAERLWCVLGKLGGIQSLATAPSLLADVRTLRQWHSDRLRQMSQISQHFSQNLLIA
PVAAAAPVLLPPAFLSPPASATSTSSSSVKSEFIERHPSIASLLERPRRISSSGAQEPLN
LSLPHVRHQVKRDVDSDEQLEEMKVSPVPTTLSE
Download sequence
Identical sequences Q9XUK7
NP_001021667.1.50509 6239.W05B5.3a W05B5.3a W05B5.3a W05B5.3 W05B5.3a

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]