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  Home > Genomes > Caenorhabditis briggsae 2 > CBG09244

Domain assignment for CBG09244 from Caenorhabditis briggsae 2

Domain architecture

Domain assignment details

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Strong hits

Sequence:  CBG09244
Domain Number 1 Region: 1870-2062
Classification Level Classification E-value
Superfamily Fibronectin type III 1.01e-36
Family Fibronectin type III 0.0021
Further Details:      
 
Domain Number 2 Region: 2079-2169,2533-2637
Classification Level Classification E-value
Superfamily Fibronectin type III 3.18e-31
Family Fibronectin type III 0.0013
Further Details:      
 
Domain Number 3 Region: 3089-3297
Classification Level Classification E-value
Superfamily Fibronectin type III 1.16e-25
Family Fibronectin type III 0.00086
Further Details:      
 
Domain Number 4 Region: 2169-2261
Classification Level Classification E-value
Superfamily Immunoglobulin 1.15e-17
Family I set domains 0.0089
Further Details:      
 
Domain Number 5 Region: 2271-2351
Classification Level Classification E-value
Superfamily Immunoglobulin 0.00000000000000296
Family I set domains 0.01
Further Details:      
 
Domain Number 6 Region: 231-328
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000000000321
Family I set domains 0.0039
Further Details:      
 
Domain Number 7 Region: 2353-2438
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000000107
Family I set domains 0.012
Further Details:      
 
Domain Number 8 Region: 2993-3096
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000000112
Family I set domains 0.011
Further Details:      
 
Domain Number 9 Region: 83-173
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000000331
Family I set domains 0.0045
Further Details:      
 
Domain Number 10 Region: 1691-1777
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000000496
Family I set domains 0.026
Further Details:      
 
Domain Number 11 Region: 1788-1876
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000000805
Family I set domains 0.012
Further Details:      
 
Domain Number 12 Region: 3277-3376
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000333
Family I set domains 0.013
Further Details:      
 
Domain Number 13 Region: 2662-2740
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000616
Family Fibronectin type III 0.0016
Further Details:      
 
Domain Number 14 Region: 2458-2547
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000365
Family I set domains 0.019
Further Details:      
 
Domain Number 15 Region: 2909-2987
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000474
Family I set domains 0.033
Further Details:      
 
Domain Number 16 Region: 1604-1686
Classification Level Classification E-value
Superfamily Immunoglobulin 0.00000039
Family I set domains 0.019
Further Details:      
 
Weak hits

Sequence:  CBG09244
Domain Number - Region: 23-66
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0281
Family I set domains 0.03
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CBG09244   Protein: CBP02422   Gene: WBGene00030863
Sequence length 3376
Comment CBP02422 WBGene00030863 status:Predicted UniProt:A8X9J5
Sequence 
MYRNDYPVANFDKMAFEGFTKGSEHSFNVTINDIRKLDGGKLVFEAKNDYGVDKCTILLD
VRDSGSFIDDYSEIHRSAEIKDPVGDVQVKEGETATLTGKVDGYPLPELIWIKNGREIDM
MAPSTKYQLDYHSDGEFEARIANCTFEDDDDYSLLVENLAGVDSCNFQVFVDCKEYPDDE
HFNRRRRLQRGRRVVEASSDSELDDAKKRKKRRTKRVVERRNPNAPRLTQLIPPRFDKIL
SDHDAIVGDNVVMMVETLGEPEPQVRFYRDGKLIGDDSGEKVEVRHEDEMRKHWLILKDI
CKDEEAEYACQAINVAGEAWCFSDVVVHLSEESRDDDKSIDLAEEAVSQGEKSEAGEDKT
KQRAKKKVTKKKDRAETEKQDLTKGADDAKPLESEQVLEQVESETAVQKKTDDGDTFVEK
KKKKTSDVKKAKETDEATSEKKADEKAKKEADAKQRAEKKTLKQKKEATDAAPKTLEAKK
ETSQAPSSRESTPPSDGKKKKQIPKALFIPDEISSRFGDPSTMHSETNITTTIRGREGSA
DAKTPLVEPLSASVSMKVESAKEKAEFSFKRRSETPDDKSRKKEGLPPTKKSEKKVSQYS
HDCVWMVLLFFFRSLKIQTIQAFFFPLVMHESVIPRAHPALNPQILPQRTNALFPFFRMM
HRTTDAAVPLKDQKEVKSETEVKAKKDLEAKTKKEADNKAKKEAEAKTKKEADDKAKKKA
DAEIKKEAVTKKEADEKAKKDLEAKTKKEVDENAEKEAEAKTKKEADDKAKKDLEAKTKK
EAEEKAKKEAEVKTKKEADETAKKEADAKTKKEADDKAKKNLEAKTKKEAEEKAKKEAEV
KTRKEADDKAKKEAEAKKEADDKTKKGSDEKAKKEAEAKTKKEADDKAKKEADDKTKKES
DEKAKKEAEAKTKKEADDKARNEAEAKKEAEDKAEKGADAKTKKEADDKAKKEAVAKKEA
DDKTKKEAEAEKEAEAKTKKEADDKVKKDLEAKTKKEADEKAKKEAEAKIKKEADDKARN
EAEAKKEAEDKAKKEADAKTKKEADDKAKKDLEAMTKKEADEKAKKEAEAKTKKEADEKA
KKEAEAKTKKDVEAKTKKEADDKAKKDLEAKTKKEADEKAKKEAEAKIKKEADDKTKKEA
DAKTKKEADDKAKKDLEAKTKKEADEKAKKEAEAKTKKEADDKARKEAEAKKEAEAKKEA
DDKAKKEAVAKKVADDKTKKEADDKARNEAEAKKEAEDKAKKEDDAKTKKEADDKAKKKA
DEKANKEAEAKTKKDVEAKTKKEADDKAKKDLEAKTKKEADEKAKKEAEAKIKKEAEAKK
EADDKAKKDSEAKNKKEADEKARKEAETKKEAEDKAKKEAETKKEAELGKSDETKPKKRV
VKKKTDKSDSSISQISSADTSSEFTVQEKPAEKVEQLPDESTSATIKKAAQPQEPEVEKK
ELLSDDKKPVEGKPPKPEESDETTKKRVIKKKTQKSDSVASEASLADVSKISDDLEEKPK
KKVLKKKTEKSDSVISETSSIDTAKPDTTETVVKQEVTTDSAIESEAKESTKKEDEPSIE
DVMTRRKSSAIFSDDEQSISSKTSSEGRRRRRRTGFASTFASETLALRGDNVEIEVELVD
EEDKVTWKVNGKDADLNARCHEMTHTFFRTLIIDQVEPSDSGMEITATCGTESHTTTLKV
EELPVDFVKFLPRKTSGKEGQEVTISVTLNHPVDISKVVWLKNGKPLEINKDYSIDTVGC
SVSLTLRRAKYEDSGKYTVVCDGIDCSTHLSIQGKPVLKNVSEKKPVILVDKDDQFSIHV
AYDSNPEATFSMSVDGKDLEFDGRSRIDVVDDGLKLTKRGVSKDDAGEYEVKLKNEFGEV
TQKFDVKVNDTPSAPGDVSVVKVESDCLHIEWTAPAENNGAEVTSYVIEKKESGRRKFHK
VGSVNGKKTSHVIDDLEIETPYIIRIAAVNKFGTGEFIETKPVQTGSPFQVPTVESPPTI
ENVTSTSCSLNWPKPTDDGGSPVYGYDVYKRENGGEWQKINGDELVFTESFNVRALSSGK
EYEFKVEACNEAGLRSNSNVVSEKLMVQGLVPETILDAPMVKVLDNDKVEVTWKTDGENE
FVVQYKSDGSSIWASIDIGEAAAATSKCIIDGLREGIPYVFRVAPRNQHGTGEFSEQTVP
VVVLADDAPRVLKAIKPVKIPKKCELRLECHAAGHPAPEYIWYKDGKEIIPMDNNTEIVN
EGSMSALIIHELASEDVGLYKVLVENIHGTAESEAEVSISDVRAHFNSSFSELTEIEEGH
DIELTCEVSDEEAVVNWYKDGKKLVASDRVQFYAMARKRTLRIKGSTDADSGVYKCETTD
GRSRAEGEVIVNEQEPHILVGPQDAIVKTFGETMVLFCETSKPVRKVKWFKNGVEIWPQM
NKAVMDSDGKRATLEIKNFDKHDIGAYTASVSDKETSAPAKLAFEVAPSLTIPEEIREGV
TVHAGNEFDFTVAFTGFPVPTIHMANNGTPIKAIATVTEYDDSISVRMKNVTLDNSGIVR
VIAESPLGQCVKEIALKIIDKPSEPLDLQFKDVTEDSVFLSWQPPVETNGAPLTGYVIER
KGVDNNRWRPCGHVEPTKLTFVAEDLFCNQVYGFRILAVNEVGESEPCETVDVLTLESSE
AVSESSELFIPKIAILTTPQVTVAADGTKVTLRWDECPETSLYKIERKKVGESEWLEIAN
TDRNKFKDRSLTESGEYTYQVTATGIHAVSSPSEETEPVKILVPGSEMPEIKAEKKSEAV
DDSKTTVSTEKPKDSADLASEAVEEKKTKKVTKKKVPENKGEETLQEVKEKLKKGKAVEK
VQDESRRGSLQTSDAESVTTASEKKAESEAEKSAKKTDEKTGKSDAPEKTAEKSEAERSA
TEKDSTEKKKKVVKKVAKKGLVKADKSKVELISGKTGEISAHVAETAVSVEWKKDGKALD
ASYTVTNQGGVSTVKIPTVDVNASGQFTCKVKSSEGDEEEVSIAVTVKLPEIPKVEAEQS
VVEVKVGDTAKLSAKISEPATSVNWTKDDKPVQEDGNVKSQISADGTAQLTINKTDSGHA
GIYKLNVENEAGKGKVEIALRIKGAAKGAPGIPTGPIVYDDVTENTAEFSWKAPENNGGC
DITEYNVERKESKNKGWKQCGKTKELKFKVDGLEADTSYDVKVSAINTMGTGVALEGKLN
TLKKATEKKVEKVEIKEEKSEEKEQKTSDLKPIGKPELTSSTATSIALKWASDNDDVTYT
VQMKESNSKRPWSVAVKECSECAATIAQLKEGTTYLFRVIAQNKAGQTVTSEQSEAIECK
DTKESQKPAITSAPADLTAIKNTKSKITAEFTGHPSPEVHWFKNKKEIFSGKRQWIENVS
GVSSLTIGEMREDDEG
Download sequence
Identical sequences A8X9J5
XP_002636803.1.8413 6238.CBG09244 CBG09244

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.