SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for CBG03012 from Caenorhabditis briggsae 2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  CBG03012
Domain Number 1 Region: 374-588
Classification Level Classification E-value
Superfamily DBL homology domain (DH-domain) 1.01e-35
Family DBL homology domain (DH-domain) 0.00063
Further Details:      
 
Domain Number 2 Region: 186-313
Classification Level Classification E-value
Superfamily BRCT domain 1.89e-16
Family DNA topoisomerase II binding protein 1, TopBP1 0.028
Further Details:      
 
Domain Number 3 Region: 129-209
Classification Level Classification E-value
Superfamily BRCT domain 0.0000000174
Family DNA ligase 0.022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CBG03012   Protein: CBP34838   Gene: WBGene00025958
Sequence length 958
Comment CBP34838 WBGene00025958 locus:Cbr-ect-2 status:Predicted UniProt:A8WT00
Sequence
MDVSMLSPQKRSRNIQKLAVWRGDVAQNKEMFDWLEEQKEVCIIKLHIYFRNRKLRFQKR
KIEAVYYENLEELDSDWSEYTFFCGDFKSDLFRKLTQNQDTGTSAHLIVGTAVLKQKLKR
RLDFMPLRPCRPLYCELMKNVTMKLSTEVTNKRELVELVHFMGGSVRKDTVQRTNVFIAA
KVEAKVQSMTLVGVPTLRADWITDCWENRDDPDYDVFRQDIVDKHKLGVFEGLSLYFHGF
KKNEIDDMCFNLNNTGGTLAEDPSKATHVVYNPVNDDVETLPVSANQVHVTQEWFWVSLH
RGWCALEDNFALPTGTLRRKPLDNSTINSPLGKSLRSHNSRSLSSMRDCSGEGPSLNMTP
DYIYSNDEVENVGKSPRQPSKRLRVCMEMVDTERNYVSLLKLVIKFKEALEKEIAQNEFM
TKSDVAMMFGKLDPILELHEKIHAKLSSIMAEANSVLTAANGKKNDDKSLDFAQVWIDAK
DEMKKAYPQYINSFDTMKRFFDKQDRENSKFHTFCKAKESNPEFHRLKLTDLMVKPVQRL
PSVALLLKEIGKKSESKLKHTAEEAQKVIDEVLKVANKTREKNDNLISHLSKFTDIENVP
PTLVAANRMFCRELVVSPIASTSSRLSVVPRMKLFFFHDVLIVCFETGIQLNFSKFLIQL
TKIRSEKNTMQRLARHASFASLHARQRRPYKYIDQIQLTTMRSAFRIRPPEEVSKFLEAH
HTVHGIRPREVFVWCLIHRDEQGGDTETVFESSDCEEVRDFLDEIHLKLMSNCGRFFFQT
EMADVNELNDAHVADMTTRFFKNLCATKPQTGHGSQMNITEWSHNESMMGPPQSQSRMRR
AFSNAQLTITSTLGFGRNQSRNNLARINENSSFMASPRVSCDPAALANMTSVGMPGSVSE
SESTPKRGLRARLTSSTFLNRTHLVRNSSMRRQTHGFASQSEIEPARSRTSSQRVTEL
Download sequence
Identical sequences A8WT00
CBG03012 6238.CBG03012

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]