SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for MDP0000204317|PACid:22634685 from Malus domestica v196

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  MDP0000204317|PACid:22634685
Domain Number 1 Region: 36-295
Classification Level Classification E-value
Superfamily RNI-like 0.0000000000000432
Family Cyclin A/CDK2-associated p19, Skp2 0.018
Further Details:      
 
Domain Number 2 Region: 3-39
Classification Level Classification E-value
Superfamily F-box domain 0.00000131
Family F-box domain 0.0068
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) MDP0000204317|PACid:22634685
Sequence length 419
Sequence
MDPLPDAVVQYILSYMENAKDVAICNCVSKRWKDSMPYIRSLYFPRSSFDSHMGGDSPDD
IVLKMVSMIERLENLVVYSPFSGAGLASWLLIIGPSLKYLELRMDNIAEYQTSLESPSKL
DYLSAAENLESLKLWGVLVARSPKWDVFQKLXNLEIVGAKLEDPALSTVLQACPNLTNLV
LLGCEGVRSVSIELPYLEQCKLDFYGLGNCSFSMGCPKIKFLEVQGCSWIRVRDTKXLKN
LSIANNAGRVYMVDFEKLVALEFLSIRGVQWCWDAIRNMLQCASEVKHLFMKVEFTGDSE
ILQPFPEVDFVDFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDSGFSIPCLEEVMITVRS
PLNAEQKMSTLESLLKYXKNLKTMVIKILQMKSSHSSADDFFDEICRFRHMNRKIVRIE
Download sequence
Identical sequences MDP0000204317 MDP0000204317|PACid:22634685

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]