SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Dappu1|304382|PASA_GEN_2800136 from Daphnia pulex

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Dappu1|304382|PASA_GEN_2800136
Domain Number 1 Region: 575-691
Classification Level Classification E-value
Superfamily Bromodomain 4.06e-33
Family Bromodomain 0.00052
Further Details:      
 
Domain Number 2 Region: 449-566
Classification Level Classification E-value
Superfamily Bromodomain 5.63e-30
Family Bromodomain 0.00038
Further Details:      
 
Domain Number 3 Region: 177-285
Classification Level Classification E-value
Superfamily Bromodomain 2.75e-27
Family Bromodomain 0.0011
Further Details:      
 
Domain Number 4 Region: 311-422
Classification Level Classification E-value
Superfamily Bromodomain 1.44e-26
Family Bromodomain 0.00097
Further Details:      
 
Domain Number 5 Region: 8-123
Classification Level Classification E-value
Superfamily Bromodomain 3.14e-22
Family Bromodomain 0.0018
Further Details:      
 
Domain Number 6 Region: 1243-1317
Classification Level Classification E-value
Superfamily HMG-box 0.000000000000105
Family HMG-box 0.0016
Further Details:      
 
Domain Number 7 Region: 747-812
Classification Level Classification E-value
Superfamily Bromodomain 0.0000000000222
Family Bromodomain 0.0043
Further Details:      
 
Weak hits

Sequence:  jgi|Dappu1|304382|PASA_GEN_2800136
Domain Number - Region: 1048-1165
Classification Level Classification E-value
Superfamily BAH domain 0.0902
Family BAH domain 0.019
Further Details:      
 
Domain Number - Region: 1384-1418
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0952
Family Classic zinc finger, C2H2 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) jgi|Dappu1|304382|PASA_GEN_2800136
Sequence length 1593
Sequence
MAENSRKRRRLDPVEICQQAYDVIRNFKKEDGALLCDALIRAPKRRQEPAYYDVVSNPID
LLRIQQKIRTDEYEDLDQMTVDIERLVKNAKKFYPDHSTEYQDACTLWDLYRKTADKINE
SERVDEVPEVKPVKERIVVKLGRPPKKPVNVSPIESEDAESEESRDNFSSSSSQHLNDED
NMYEELFAAVMNATSSDGRLLHSVFQLLPSRRLYPDYYQVIENPIDLKQIATKIQANEYS
NLNEMEKDLNLLTKNACSYNEPGSQIYKDAKLLRKTVSSRKAEIEHSRHTGGKISERISE
LGGSHIRPDDADSSPFWQLYDAVHNYVDNQGNVLCEPFLKLPSRRRYADYYHEIKNPISL
SRIRSKLAREDYGNLSDLSSDLSLMFENAKRYNRPDSKLFKDAVKLQRVMQAKVQELLAD
DESSDGEIEFTPKRPKGRPRLNATLPKATPKVRSDVDNVLRKRLRILYRCLMDYNPTDDG
RQPILVFMEKPSKKLYPDYYRVIAEPIDMVTIDSNIKNDRYTCEEELLDDLRLMFNNCRQ
YNEEGSVIYEDANMLERVLLDKARELGLALAASAKPKRRSRGPNLQQKLKALYEAIKEHR
DLKGRQLASIFVKLPSKTEYPDYYEVIKKPIDLEKIGQKVKASHYENVEELLADIVLMFD
NACRYNEPDSQIYKDALTLQRVALQTKIQLCEDEGLVPDVRAAVQELFTSLFAAVYNHQD
EEGRCYTDSLAELPEHDEVDGKKVRAISLDLIKRRLDKGLYRRLDAFQEDIFLCFERARR
LSRTDSQVFEDSIELQSHFIKQRDEFCRHGDVLSSPALNYSLKQLLATVEAVRQEKLPKE
QPEEDLENKDIAAPAATVSDGLEMSFNQETYRVGDLVYVEATERNMENHVYLIERLWTAN
DGQQMFLGNWFCRPNETFHLASRKFLEQELFKSDMRSAHPLSHIRGRCCVLNVKEYFKSK
PEGFADKDIYVCESRYSTKARMFKKIKVWTSLQTPGVVLVPRDQPLEPKRVVSELVNVTV
PAPVPSDGSSAPPTQPGMNYYQQLNIPGHTLRTGDCVYVRAENGKQLIAQIDSMWIDSGN
VAFFHGPWYVTPAEISTQITGRVFYRQEVFLSSIEDTNPLMSVVGKCCVLDFNDYTTCRP
TELTESDIFLCESFYEESRRQIKKLPRDGLKKYTHSPAVIRDEIYFFRRPIQPQRESSSL
MTKLAGEELTEDSMDGAPPSVGSDSCPASMPHTPSSSSLNTPSVVKKPIKIFQKRMVTGY
IIYSGEVRKNFAAKNPDATFGEVSRLVGNEWRNLPAHVKSEYEERSQRVNEETAAEMARN
GTDSTPSASGTTSGDAVHQGDVIFECFWKKCDWQGEEIGELTEHLLSEPHGHVLTTINPN
DTEFQCMWRGCSRIRKGVPPFPKMERLLRHVREIHIVKNQGRIVSPNDRNKSFNSAKKVA
RPSTTPGSTQTNVSAFSTTPGPANVISHAPTNSVHQPIGHQVQVQNTAQQSRQATGEPIF
VAVPPKPQRLLHSEAYIKYIEGLHNQYRYISNWDKSLRATKTAVPDVNRLPSHWLASNTQ
AKPDVNGRDTLSTLWALREHMLKDTLNISNLFN
Download sequence
Identical sequences E9GL93
jgi|Dappu1|304382|PASA_GEN_2800136

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]