SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|147919604|ref|YP_686656.1| from Methanocella arvoryzae MRE50

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|147919604|ref|YP_686656.1|
Domain Number 1 Region: 309-468
Classification Level Classification E-value
Superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1.14e-22
Family Histidine kinase 0.0037
Further Details:      
 
Domain Number 2 Region: 93-249
Classification Level Classification E-value
Superfamily GAF domain-like 0.00000000000113
Family GAF domain 0.0076
Further Details:      
 
Weak hits

Sequence:  gi|147919604|ref|YP_686656.1|
Domain Number - Region: 7-94
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.000611
Family Flavin-binding PAS domain 0.044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|147919604|ref|YP_686656.1|
Sequence length 471
Comment putative signal transduction histidine kinase [Methanocella arvoryzae MRE50]
Sequence
MDSSVDNSTCVVDRDGMIVWASPSFIELFSHRASPVGMMFNQLFSGLVDVCRHGEVLEDR
DRLGRRRFFSVECQRMTGPGGERVSEIIVLRNVTLMRTLYDISRLTTQTKSPKDLLEKVL
WIVKETYGYTGLAGYVARGQEIELLASKGWTEKLKSMISIGPIAPDAPSMAGRCAYHREQ
MVTTIEQYGLMTTVKDAIERIGAEFVVATPMIDHDGLVGVLTVLHGRALTPSELDTLQTI
CNHIAIALNVRVSEENLTSQADQARLFVELLAHEIAAYNRIIQAWQEQGAGEKLPEDVLW
AIHGSDEALNTVRTISDANGALVRSIPVEESVKRAIEDSTILAKPYGRKLTVTIKALPQD
VKVDPLFHYAMRNIIVNSARHSTGKSVDVDIKGTKDRMGTCKIEVSDNGPGIPDELKSGV
FRREDGQTGIGLYIVKKIVSRYGGRVWIEDRVPGNPGRGARVVITLPQAQD
Download sequence
Identical sequences Q0W2R3
gi|147919604|ref|YP_686656.1| 351160.RCIX2211 WP_012035251.1.28485

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]