SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|219851344|ref|YP_002465776.1| from Methanosphaerula palustris E1-9c

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|219851344|ref|YP_002465776.1|
Domain Number 1 Region: 29-288
Classification Level Classification E-value
Superfamily Pectin lyase-like 1.57e-18
Family Galacturonase 0.018
Further Details:      
 
Domain Number 2 Region: 315-460
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 0.0000000000000017
Family Family 6 carbohydrate binding module, CBM6 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|219851344|ref|YP_002465776.1|
Sequence length 461
Comment periplasmic copper-binding protein [Methanosphaerula palustris E1-9c]
Sequence
MKGNLRTRITMSVVLGLLVAGLFLISSASAVDVTGPVVIDSPGTYELQKDITSTSEPVCI
EIRSSDVKLEGNGHIISGNDVSNSCGVLVHGSSALSNVTVRNIVVKDWYFGVYFWNVKSS
SIRNVDARSDYFGISLNPGTGVSITGNILRGNTHGLVLTSSTGTTITDNHIFGNEGDGIS
IVSSSGNTITNNELNNAKNVGFVGSTGSNTWSGSVTSGRNIIGGPVTGGNYWATPAGDGF
SQVNVDKEENGISTVPYTLKSGNVDQCPLVMESEDGAVSNVTAKPVTTKPTTTANVSPNT
TSTTSSSTFQVPYVGHILPSQIEAEDYDMGGEGVGYHYSGSSNKYSIYRVGGVKIERNAT
EKFYYVSNLKYGDWLKYTVSVPQDGTYQLTFRAAAVSDKQYVVVTDDNDKSVSAAAWLRQ
TLSMDRFATSPAVSIHLTKGTHVLKVFSYGNENIDSFTLSR
Download sequence
Identical sequences B8GFK5
gi|219851344|ref|YP_002465776.1| 521011.Mpal_0686 WP_012617372.1.75456

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]