SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|219851898|ref|YP_002466330.1| from Methanosphaerula palustris E1-9c

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|219851898|ref|YP_002466330.1|
Domain Number 1 Region: 90-329
Classification Level Classification E-value
Superfamily NHL repeat 4.45e-44
Family NHL repeat 0.0000937
Further Details:      
 
Domain Number 2 Region: 336-385
Classification Level Classification E-value
Superfamily Type I dockerin domain 0.000000235
Family Type I dockerin domain 0.0048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|219851898|ref|YP_002466330.1|
Sequence length 387
Comment NHL repeat containing protein [Methanosphaerula palustris E1-9c]
Sequence
MKPSYFMYLVCALLILLSIIPAVSADGGYVYSTQWGRYGSGDGQFNYPCGVGVDSAGNVY
VADTFNNQTQKFTSTGGFITRWNGSASAGGAFYYPCGVAFDSAGNVYVADEYNDQIQKFT
ATGGFITSWNGSASAGGAFNKPGGVAVDSVGNVYVADSANNQIQKFTSTGGFITSWNGSA
SAGGAFEYPGGVAVDSAGNVYVADTFNGQIQKFTSTGEFITRWNGSASAGGVFDKPSGVA
VDSAGNVYVADWGNNWVQKFTSTGGFITGWNGSGLAGGAFQYPVSIAVDSTGNVYVADYG
NNRIQKFAPAGTTPVVIVPGGSAIPHDLNNDGLYEDVNGNGVLDFDDVVLFFDQMDWIAT
NEPVSAFDFNKNGQIDFNDIVILFNEL
Download sequence
Identical sequences B8GHK2
gi|219851898|ref|YP_002466330.1| WP_012617926.1.75456 521011.Mpal_1273

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]