SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|219852086|ref|YP_002466518.1| from Methanosphaerula palustris E1-9c

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|219852086|ref|YP_002466518.1|
Domain Number 1 Region: 571-715
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 1.7e-29
Family Family 6 carbohydrate binding module, CBM6 0.00085
Further Details:      
 
Domain Number 2 Region: 128-210
Classification Level Classification E-value
Superfamily PKD domain 1.44e-24
Family PKD domain 0.00072
Further Details:      
 
Domain Number 3 Region: 209-293
Classification Level Classification E-value
Superfamily PKD domain 3.92e-23
Family PKD domain 0.00035
Further Details:      
 
Domain Number 4 Region: 290-374
Classification Level Classification E-value
Superfamily PKD domain 3.79e-19
Family PKD domain 0.00081
Further Details:      
 
Domain Number 5 Region: 376-477
Classification Level Classification E-value
Superfamily PKD domain 0.0000000000196
Family PKD domain 0.0029
Further Details:      
 
Domain Number 6 Region: 34-133
Classification Level Classification E-value
Superfamily Carboxypeptidase regulatory domain-like 0.0000000916
Family Carboxypeptidase regulatory domain 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|219852086|ref|YP_002466518.1|
Sequence length 719
Comment carbohydrate binding family 6 [Methanosphaerula palustris E1-9c]
Sequence
MSLMKRMTWLLVVLAIVSCLLMNSPATAVPDSYLRGYVIDSSTGQPVSGATISMTGSNLS
PTSTISNGDGSYSLGRRDTGLGLKSGERIVDGNNIPRYVDLTAVKDGYLPYASSVDLRLY
QVSGYNISLTPFTANFYAFGHVGQAPYSVRFMDQSTGSPTAWFWDFGDGSNSTEQNPTHV
FTKNGVYNVALTATYDWGSNTCTQYRCIIVNSVPVAAFTANATSGRTPFTVQFTDQSSDA
NGYQWQFGDGTTSTEQNPIHTYTSPGTYTVMLTVSVPDYGSVFIQKPGYITVTEPSSVDF
AANVTAGLSPLAVHFNESVNGSVQYFFWQFGDGSTSSESNPVHVYETAGRYTVSLMTVGS
NGTEVKTIEDYINVTSPVTPTVTPTATATATATVTPTGALPVANFTVTSSDQDSLGIQVA
DTSENATSVRYDLGDGTTTAYRTFRYTYWQAGTYTIDQTATNAAGSSHKSFAVTVPATTF
PPVGGDQGWYTVHCNVDGASVLFDQTPMGTIAGGILKVKVYTTATPYYTYTVSKDGYATF
QGTITTHPGKDQNVDLTAQLIPIAGQVYNGPHTIPGTLQAEDYNIGGEGVTYHDTTVGNE
GGAYRQDDVDIEVLDTDGSPNVGWIRAGEWLTYTVNVSTAGTYDAGFRVASTHSGSSVLV
YVDNGTTPVATLNVPNTGAWPVFQTISVPVTLPAGQHQFVLKFPTDFVNINWIRFALRG
Download sequence
Identical sequences B8GI55
521011.Mpal_1473 gi|219852086|ref|YP_002466518.1| WP_012618114.1.75456

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]