SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for 1jmsA from PDB chains (SCOP 1.75)

Domain architecture


Domain assignment details

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Strong hits

Sequence:  1jmsA
Domain Number 1 Region: 175-380
Classification Level Classification E-value
Superfamily Nucleotidyltransferase 1.49e-68
Family DNA polymerase beta-like 0.000000218
Further Details:      
 
Domain Number 2 Region: 21-111
Classification Level Classification E-value
Superfamily DNA polymerase beta, N-terminal domain-like 3.22e-30
Family DNA polymerase beta, N-terminal domain-like 0.0000632
Further Details:      
 
Domain Number 3 Region: 114-172
Classification Level Classification E-value
Superfamily PsbU/PolX domain-like 1.92e-18
Family DNA polymerase beta-like, second domain 0.0000303
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) SCOP: 1jmsA   PDB: 1jms
Sequence length 381
Comment (A:)
Sequence
nsspspvpgsqnvpapavkkisqyacqrrttlnnynqlftdaldilaendelrenegscl
afmrassvlkslpfpitsmkdtegipclgdkvksiiegiiedgesseakavlnderyksf
klftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeae
avsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflitspeatedeeqqllhkvtdfw
kqqglllycdilestfekfkqpsrkvdaldhfqkcflilkldhgrvhseksgqqegkgwk
airvdlvmcpydrrafallgwtgsrqferdlrryatherkmmldnhalydrtkrvfleae
seeeifahlgldyiepwerna
Download sequence
Identical sequences 1jmsA 1jms_A

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