SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Danio rerio 69_9 > ENSDARP00000116882

Domain assignment for ENSDARP00000116882 from Danio rerio 69_9

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  ENSDARP00000116882
Domain Number 1 Region: 1720-1830
Classification Level Classification E-value
Superfamily PDZ domain-like 1.58e-29
Family PDZ domain 0.00025
Further Details:      
 
Domain Number 2 Region: 1449-1554
Classification Level Classification E-value
Superfamily PDZ domain-like 5.13e-27
Family PDZ domain 0.033
Further Details:      
 
Domain Number 3 Region: 1218-1308
Classification Level Classification E-value
Superfamily PDZ domain-like 1.58e-24
Family PDZ domain 0.012
Further Details:      
 
Domain Number 4 Region: 339-449
Classification Level Classification E-value
Superfamily PDZ domain-like 8.02e-24
Family PDZ domain 0.0097
Further Details:      
 
Domain Number 5 Region: 226-320
Classification Level Classification E-value
Superfamily PDZ domain-like 1.28e-22
Family PDZ domain 0.01
Further Details:      
 
Domain Number 6 Region: 119-221
Classification Level Classification E-value
Superfamily PDZ domain-like 3.09e-22
Family PDZ domain 0.012
Further Details:      
 
Domain Number 7 Region: 1048-1147
Classification Level Classification E-value
Superfamily PDZ domain-like 4.6e-22
Family PDZ domain 0.00023
Further Details:      
 
Domain Number 8 Region: 1629-1712
Classification Level Classification E-value
Superfamily PDZ domain-like 4.86e-22
Family PDZ domain 0.002
Further Details:      
 
Domain Number 9 Region: 10-69
Classification Level Classification E-value
Superfamily L27 domain 9.81e-21
Family L27 domain 0.0005
Further Details:      
 
Domain Number 10 Region: 1553-1633
Classification Level Classification E-value
Superfamily PDZ domain-like 1.97e-20
Family PDZ domain 0.0051
Further Details:      
 
Domain Number 11 Region: 725-820
Classification Level Classification E-value
Superfamily PDZ domain-like 7.06e-19
Family PDZ domain 0.022
Further Details:      
 
Domain Number 12 Region: 526-633
Classification Level Classification E-value
Superfamily PDZ domain-like 7.23e-16
Family PDZ domain 0.019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSDARP00000116882   Gene: ENSDARG00000024964   Transcript: ENSDART00000132829
Sequence length 1831
Comment pep:novel chromosome:Zv9:22:16791095:16980410:-1 gene:ENSDARG00000024964 transcript:ENSDART00000132829 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MYENVPTVSASERQQVLQALERLQSKLVQREEWTHSDRLGTLKEALQSPLFSHILTLQHS
VKQLKDQLNSLPPDTCSEFSFSRKGQLIVSASRPSSSLGSVLSNGTALTNASSEQLQRWI
QAAAKGRKTELISLQKPLSGGLGFSVVGLRPEGVGGHGVFVRQVQPGSVADRDGRLLEND
QILAINGIPLDQSVTQQQAIALLQQQKDRVELVVARDTALKPRLSASAPITTDQWGHVEE
IELVNDGSGLGFGIVGGKTTGMVVRTVVPGSVADKDGRLRTGDHILRIGDTMTRGLASDQ
VVQVLQACGAHVRMLIAREPLGAKQPAPPPAPAMGPVSSLPPPPPVPARRASRTPNLEGF
EIHEVALKKEGQSLGISIIGHNALTSEDAVGVYVKNVIPGSIAEQTGKIQIHDRIISLDG
VNLQGYNNQEVLEVMKQSGDVVHLTLVRKIISPKRTTMEKSLDKVQRESSRVSLKRSSEM
KARADQRGSVVESIDPALSGIKQQLQANMQEPASLTEMELRAKWEQALGPHYDVMIVQLD
PVIEDDIELQKYSKLLPIHTMRLGVELDSFDGHHYISTVAPEGPVAKHGLLRPEDELLEV
NGVQLYGKSRRESVAFLREVPTPFTLVCCRRLAKEDNEYHPESEDWHSSSLQEQIEHNLS
MLARDTSLRDSIREEFQARQASAVEREVDDEGEPLEPISPEKEQMDQENDDDDEEEEEED
EGELALWSPNVQVLELEKAERGLGFSILDYQDPMDVARSVIVIRSLVPGGVADNHGGIFP
GDQLVFVNDTHLETCSLAQAVEVLKSAPPGKVYLGIRKPLAAEDRGSGQQSLWPVESVDE
QPTAKQAVSHTLPPMPEDFVNGSILSDDLDEEPELILDAEPRYASPLTTVDLQPDVEKEM
AVDEEEEDVDVNVMEDQQSSKVNDTSLPSYLSEKSRSWEEPATSSRYHLNTEPDLQEQVD
DDLSMNLEKIQLQPLKIPLGHFTSWVETADSDSDSRNEGSELTLTDTDNESAQRTSSRNK
KRRNQAGPTRGDLPEREEGEGEETPVFSHWGPPRRVEVWAEPEESLGISIVGGRTVIKRL
KNGEELKGIFIKQVLADSPAGRTGALKTGDKILQVSGVDLQNASHEEAVQTIKAAPSPVV
FIVQSLSSTPRPVSVTASSIKQHKAKRKAAQKAGQGAAPPPMRLPPPYRPPSQVQEEEHE
QEEEDEQDTEVIRQRYADLPGELLIVELEKDRNGLGLSLAGNRDRSCMSIFVVGITTGGP
ASRDGRIKVGDELLEINSQVLYGRSHQNASAIIKSAASKVKLVLVRNEDAINQMAVTPFP
SQPALFSSSETHENPPAVPAEKPQLPESLPLSRSPPENTLNKDQACVTATASSDPTHKSL
TDGESAVKKLKPAEKLLESPSEQSAKPQVEQIPSLPKLQRSSTKPSAGSLEVTSSASSVP
VSGTSPDFEYCSKDPATCPIVPGQETVIEISKGRSGLGLSIVGGKDTQLDAIVIHEVYEE
GAAARDGRLWAGDQILEVNGVDLRSVAHEDAIAALRQTPPKVRLTVLRDEAQYRDEENLD
VFPVELQKKTGRGLGLSIVGKRNGKGVFISDVVKGGAADLDGRLMQGDQILSVDGEDMRQ
ASQETVAAILKGPTDALGISIAGGKGSPLGDIPIFIAMIQANGVAAKTHRLKVGDRIVSI
NSQSLDGLTHADVVNMLKNAYGAIILQVVADTNISAIASQVESLSSSSAPSTNPEVRLVE
PETPKPKSITLEKGSEGLGFSIVGGFGSPHGDLPIYVKTVFGKGAAAVDGRLKRGDQLLS
VNGESLEGVTHEQAVAILKKQRGSVTLSVLT
Download sequence
Identical sequences Q1LXN3
NP_001120657.1.45394 7955.ENSDARP00000035306 ENSDARP00000116882 ENSDARP00000116882

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.