SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSECAP00000014069 from Equus caballus 69_2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSECAP00000014069
Domain Number 1 Region: 71-164
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.01e-35
Family SCAN domain 0.00000745
Further Details:      
 
Domain Number 2 Region: 671-727
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.7e-24
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 3 Region: 401-458
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 5.84e-23
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 4 Region: 614-671
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.46e-22
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 5 Region: 559-615
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.99e-22
Family Classic zinc finger, C2H2 0.0047
Further Details:      
 
Domain Number 6 Region: 712-764
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 8.73e-18
Family Classic zinc finger, C2H2 0.013
Further Details:      
 
Domain Number 7 Region: 443-495
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.98e-17
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 
Domain Number 8 Region: 521-572
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000013
Family Classic zinc finger, C2H2 0.0045
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSECAP00000014069   Gene: ENSECAG00000016471   Transcript: ENSECAT00000017326
Sequence length 771
Comment pep:known chromosome:EquCab2:10:28169489:28177463:-1 gene:ENSECAG00000016471 transcript:ENSECAT00000017326 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
LNKYSLPLFVLILAASSHSSPRGRHWSQRSSPVFPMRPAALGSPGHAPPEHEGPVMVKLE
DSEEDGEAAPWDPGPEAARQRFRHFRYEETMGPREALARLRELCRQWLRPEVRSKEQMLE
LLVLEQFLGTLPPEIQARMRGQRPGSPEEAAALVEELRPEPGGPRRWVTVQVQGQEVLSE
KMEPSDFQPLPQTKPRTPEPGPEIPPGATRESPLGLQVKEEPEVTENPELLASGPLANPE
EAPSTFLPEEAQGCRIVLEQVPPQSETGPEGPSWREHPGALWQEERGGVFSPGFALPMDN
VSAGPVTVSPHLHIPWHLGVPDLTSRLRSPCRESSFSHALVLHSDPGGEQDLTGEDPRQS
VGPMLATARWRAPRGRSRGRGRPSTGAGTVRGGRCDVCGKVFSQRSNLLRHQKIHTGERP
FVCGECGRSFSRSSHLLRHQLTHTEERPFVCGDCGQGFVRSARLEEHRRVHTGEQPFRCA
ECGQSFRQRSNLLQHQRIHGDPPGPGAAPPTPPGAPEPPGPFPCSECRESFARRAVLLEH
QAVHTGDKSFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIH
TGERPFACAECGKAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEK
PYHCSECGLGFTQVSRLTEHQRIHTGERPFTCPECGQSFRQHANLTQHRRIHTGERPYAC
PECGKAFRQRPTLTQHLRTHRREKPFACQDCGRRFHQSTKLIQHQHVHNAE
Download sequence
Identical sequences F6XD42
9796.ENSECAP00000014069 ENSECAP00000014069 ENSECAP00000014069

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]