SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|507716446|ref|YP_008049055.1| from Paenibacillus polymyxa M1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|507716446|ref|YP_008049055.1|
Domain Number 1 Region: 648-811
Classification Level Classification E-value
Superfamily Fibronectin type III 5.26e-18
Family Fibronectin type III 0.0039
Further Details:      
 
Domain Number 2 Region: 983-1142
Classification Level Classification E-value
Superfamily Fibronectin type III 4.3e-17
Family Fibronectin type III 0.0043
Further Details:      
 
Domain Number 3 Region: 819-982
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000000000407
Family Fibronectin type III 0.0057
Further Details:      
 
Domain Number 4 Region: 1152-1299
Classification Level Classification E-value
Superfamily Fibronectin type III 0.0000000000332
Family Fibronectin type III 0.0061
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|507716446|ref|YP_008049055.1|
Sequence length 1530
Comment Tenascin-R TN-R [Paenibacillus polymyxa M1]
Sequence
MYRKNKRRVRKHSKWVYGALALLLLLMTIPIFPQRVSAATQEIIGGPFCQNNLPGGGDSW
GSWSGSGIGATEVYTGMGSARYKCDGTTQPTNRFIDIGRSIKTSDYRVFVYIEGSYHTDI
YTSNAAAGDSWRPNGTNLYTWTNVTKFYANSDYQGKWIDITDSITLRDVRYFRAMGTSQQ
TSNEISRFGIRIIPKSDLMPKPPQIHADAGGQAVTGWTKKPVTVWIDGDVAPEGLKHYEY
SLNGGAFQQFIGPFTVYDHGVNTIYARTVDVNNQYSGLSSANARIDRMPPTPPNIDVTGN
SNEYAVLLQPGADDYSGLAHTQFRLTGVVNQDWQDYGGVFHVNQDGKSTIYARSIDSVGN
VSREVSKEVTIDKKGPTAPLIRVSETGPTNRDVNIAIESGSDSTNGIKMTQYRLSPTGEW
LTYNGTFTLNAEGSYELSARTINNLDVSSPIVTQSVLIDRTKPTPPKVAFSEVTNPTRYI
NKPVQFTLSGVTDTTALHYEYQLGSGAYVPGSSGILNSSGIVEVTAQAVDAAGNRSVPVT
AKTYIDLEQPSIQLTPNSREWKDTHIDVKIQYADQHSGIEPSTMQYKVTNSPDSPENWET
AVDPIVQLDLSNEGEWYVHAKVKDQAGNIYERVSSALRIQKQPQSVVLSATSVRNTEVDL
QWTLPSGLNDGYVYTVRNLTTNEVWDVSHPTNSFTDTGLLGGHEYEYEVRCSNHVGGNAY
SNRVHVLTLPDAPDHVQLRPVSRHSAEIMAEFTPVFSANKYSITAADANTGEIIFKDTVT
QDVYNSIKGMEPGKYYEVSVSAINDTGEGAAKHVSFLSLPDSPSGFRNVTIREDGIDLKW
NSVITATYYALERDEVSVYNDVYTEFTDTELQAGTEYSYRISAENATGFGDYAHLGVMTL
PDRVTTLSSVTKDVYSVGVAWQDVQGAEGYILNVNDEPKVQIPRDIRSYTFEGLPAGRSA
NIKIRAYNRSGTGRDTSINVVTLPNSPIQLAAVDVREHDATLIWAPVDGATQYKVTINGQ
NYYSTEPRVVVSGLTGGKNYDFQVSSGNSSGYSPPALGQLLTLPPQVQNVKVTELGNGKI
SLTWDEIISASQYAVIRKDTGEIFNTRKAYIILSDIQPGIIYSFSIQAMNTTGEGDITPL
TYRALPGQIADRSLVVKSVTDTDLLITWQEAPGADAYNVYKNEMLIGHTIAHEFKVDGLD
SSTLYRITVKPVNTSGEGKRTEGQVETLPSPAFAFSKTETTNSEFIIHWESEHENDIFVL
ASEEGTELYRGKDRGFIWRQLREKQLYTVQLWAENSQGKRTEAKQANGKTTGNTVDTGGG
AGGAGSAKPIQTVVEEPTEIKTEFFQGLTIETKPNHFSDIERVFNREKINALADLGVVKG
TSSTLFEPNRPVTRMEFTSMLVRSLKLPLETDMALEFEDITPSAWYVDLLKTAIKDQVAR
GFSSKVFGPDRVINREQAAKMVNNIIKATPQQESNVYSDSSQIVEWARKDVLGLTEINLV
QGYPDGSFRAKQEVTRAEAAEMIYNMLQMK
Download sequence
Identical sequences E3E5D8
gi|310643140|ref|YP_003947898.1| WP_013372238.1.14980 WP_013372238.1.91857 gi|507716446|ref|YP_008049055.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]