SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Equus caballus 76_2 > ENSECAP00000006369

Domain assignment for ENSECAP00000006369 from Equus caballus 76_2

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  ENSECAP00000006369
Domain Number 1 Region: 382-642
Classification Level Classification E-value
Superfamily YWTD domain 3.79e-56
Family YWTD domain 0.0000000194
Further Details:      
 
Domain Number 2 Region: 251-291
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000903
Family LDL receptor-like module 0.00076
Further Details:      
 
Domain Number 3 Region: 125-160
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000393
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 4 Region: 5-41
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000615
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 5 Region: 40-81
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000144
Family LDL receptor-like module 0.00078
Further Details:      
 
Domain Number 6 Region: 219-253
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000144
Family LDL receptor-like module 0.00067
Further Details:      
 
Domain Number 7 Region: 78-123
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000576
Family LDL receptor-like module 0.00063
Further Details:      
 
Domain Number 8 Region: 298-341
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000113
Family EGF-type module 0.0028
Further Details:      
 
Domain Number 9 Region: 164-199
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000034
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 10 Region: 334-373
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000729
Family EGF-type module 0.0013
Further Details:      
 
Domain Number 11 Region: 653-693
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000276
Family EGF-type module 0.0016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSECAP00000006369   Gene: ENSECAG00000007244   Transcript: ENSECAT00000008495
Sequence length 921
Comment pep:known_by_projection chromosome:EquCab2:2:6064723:6140856:1 gene:ENSECAG00000007244 transcript:ENSECAT00000008495 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
GSVKECEENQFRCRNERCIPSVWRCDEDDDCSDNSDEDDCPKKTCADSDFTCDDGHCIPE
RWRCDGEEECPDGSDESEATCTKQVCPAEKLSCGPTSHKCVPASWRCDGEKDCESGADEA
GCATLCAPHEFQCSNRSCLAAVFVCDGDDDCGDGSDERGCADPACGPREFRCGGDDGACI
PERWVCDRQFDCEDRADEAAELCGRTGPGPTPAPAACAAAAQFACRSGECVHLGWRCDGD
RDCKDKSDEADCPLGTCRGDEFQCGDGTCVPAVKRCNQEQDCPDGSDEAGCLQGLNECLH
NNGGCSHICTDLKIGFECTCPAGYRLLDQKTCGDIDECEDPDTCSQICVNYKGYFKCECH
PGYEMDTLTKNCKAVAGRSPSLIFTNRHEVRRIDLVKRDYSRLIPMLKNVVALDVEVATN
RIYWCDLSYRKIYSAYMDKASDPAEQEVLIDEQLHSPEGLAVDWVHKHIYWTDSGNKTIS
VATVDGGRRHTLFSRDLSEPRAIAVDPLQGFMYWSDWGYQAKIEKSGLNGADRQTLVSDN
IEWPNGITLDLLNQRLYWVDSKLHQLSSIDFSGGNRKMLISSPDFLSHPFGIAVFEDKVF
WTDLENEAIFSANRLNGLEISVLAENLNNPHDIVIFHELKQPRAADACELSAQPNGGCEY
LCLPAPQLSGHSPKYTCACPDTMWLGPDMKRCYRAPQSTSTTTLASTTTRTVADTTGAPG
TTIHSPTNQNHSTETPSLAAAVPSSVSVPRAPSISPSTPSPATSNHSQHYGNEGGKMDST
VTAAVIGIIVPMAVIALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTTEEEDEDELHIGR
TAQIGHVYPAAISSFDHPLWAEPCLGETRELEDPAPALKELFVLPGEPRSQLHQLPKNPL
SELPVVKCKRVALSLEDDGLP
Download sequence
Identical sequences F6VAX5
ENSECAP00000006369

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.