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  Home > Genomes > Methanosarcina barkeri str. Fusaro > gi|73669489|ref|YP_305504.1|

Domain assignment for gi|73669489|ref|YP_305504.1| from Methanosarcina barkeri str. Fusaro

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|73669489|ref|YP_305504.1|
Domain Number 1 Region: 23-415
Classification Level Classification E-value
Superfamily Quinoprotein alcohol dehydrogenase-like 4.19e-45
Family Quinoprotein alcohol dehydrogenase-like 0.0012
Further Details:      
 
Domain Number 2 Region: 1508-1591
Classification Level Classification E-value
Superfamily PKD domain 1.44e-30
Family PKD domain 0.0002
Further Details:      
 
Domain Number 3 Region: 1422-1504
Classification Level Classification E-value
Superfamily PKD domain 1.96e-30
Family PKD domain 0.00028
Further Details:      
 
Domain Number 4 Region: 1760-1840
Classification Level Classification E-value
Superfamily PKD domain 5.1e-30
Family PKD domain 0.00032
Further Details:      
 
Domain Number 5 Region: 1598-1677
Classification Level Classification E-value
Superfamily PKD domain 2.75e-29
Family PKD domain 0.00039
Further Details:      
 
Domain Number 6 Region: 1677-1759
Classification Level Classification E-value
Superfamily PKD domain 1.1e-28
Family PKD domain 0.00027
Further Details:      
 
Domain Number 7 Region: 1329-1417
Classification Level Classification E-value
Superfamily PKD domain 1.24e-24
Family PKD domain 0.00017
Further Details:      
 
Domain Number 8 Region: 1131-1315
Classification Level Classification E-value
Superfamily L domain-like 3.06e-22
Family Ngr ectodomain-like 0.048
Further Details:      
 
Domain Number 9 Region: 417-499
Classification Level Classification E-value
Superfamily PKD domain 4.97e-19
Family PKD domain 0.00037
Further Details:      
 
Domain Number 10 Region: 789-920
Classification Level Classification E-value
Superfamily L domain-like 1.56e-17
Family Ngr ectodomain-like 0.03
Further Details:      
 
Domain Number 11 Region: 645-750
Classification Level Classification E-value
Superfamily PKD domain 2.62e-17
Family PKD domain 0.001
Further Details:      
 
Domain Number 12 Region: 922-1027
Classification Level Classification E-value
Superfamily PKD domain 1.57e-16
Family PKD domain 0.00094
Further Details:      
 
Domain Number 13 Region: 1061-1153
Classification Level Classification E-value
Superfamily L domain-like 0.000000000197
Family Internalin LRR domain 0.074
Further Details:      
 
Weak hits

Sequence:  gi|73669489|ref|YP_305504.1|
Domain Number - Region: 538-625
Classification Level Classification E-value
Superfamily L domain-like 0.000816
Family Ngr ectodomain-like 0.06
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|73669489|ref|YP_305504.1|
Sequence length 1842
Comment cell surface protein [Methanosarcina barkeri str. Fusaro]
Sequence 
MNKHTLKIFLICITLLLVAAAQPALGSDWAQFQKDNYNSGITDEAGPISNNGSYAFAVLT
KSSGMSGIDTTPVVVDDVVYTVANGVAFAFNKTTGDQIWNHTVAGGFVLATPVVADGKIF
VGTRNGVIAALNISTGAEVWINSTGLGGEKAQVNTPIIYDSGNIYFGTWFSSGVGSYYCV
NATDGSFVWERACTSNAGYYWAGACVVGDYLVYGGDNGHLVSVNKYTGTVMEDVSTGTIF
SSGTGNIRSSMSYDQSTGRLYFAAGSSCYYVGFDSGTGTFVKSVKGSGTMSGSSTSTPAV
YNDRVYVGCGGSLYCLDADSLQIIWSYAVGAQVQSSPAISTYYDDGDGEIYIYFTTNDAS
CGMYCLKDMPGNTEPIVRFEFFPPGSMKQYSLQGAAISDGMVYYGNDAGYLFALDDPAIC
FAANTTYGSSPLTVQFTDYSVGATAWQWDFDNDGNVDSTERNPIYTYSAAGNYSVNLTIN
KSTGSVQELKTDYITVIEAKPLEDYLTYTNSSSSITITGYTGPAGDLIIPDEIDGLPVTK
IADRVFQGTPLTSVVIPDSVTDIGLYQFQNCEDLISIYTGGVPSISTNNIRNCPSLETIT
VGHRLSSITSYSIRDCPSLDAMVFEAEGDAPSASGNWNYNCPNLVVYYCENATGFTTPSW
AGKPCYPIGSPTADFSTNTIFGSAPLTVQFTYSGVGANALSWYFDDDATVDSTARNPSYT
YDTPGTYSATLYVNNPWGSDSKLRTNYITVTEAHADGWAYTSDGTSVTVTGYSGPDSDVT
IPGEIDGLPVTTIGASACKALTSLTSVTIPDSVTTIDASAFYGCTNLISVTMPDSVTTIG
SSAFYGCTGLASVTIPNSVTTIGSSAFYGCTGLISVTIPNSVTTIGSSAFYGCTNLTVMM
FNGNAPTTVGSNWASGTNLVAYYSEGATNFTTPEWNEVPCYPALTAATAEFTSNIVYGSA
PLTVKFTYTGVGANALDWYFDNDSTVDSTARNPSYTYDTPGTYSIKLNVSNPWGSDSEVK
TAYITVAEPVDNFTYLSDGTSVTITGYSGPGGDVVIPSTIGNLPVTAISDSVFKSNTNIT
SVTIPDSVTTIGSSAFYGCTGLTSVTIPNSVTTIGNNAFNGCTGLTSMTIGNNVTKIDDR
MFYGCSALISVVIPDSVTTIGDSAFYQCSNLASVTIPDSVTTIDSYAFRDCNALTSVTIP
DSVTNVESRLFYGCTGLTSVTIGIGLDEIPSYMFYGCSALTSVTIPDNVTEIGSNAFRKT
GLTSVTIPNKIATIGSSAFRDCNALTSVMFTGNAPSSVSSSWASGSTSLTAYYYEGATGF
TTPTWNSVACYPLTAAPVADFEADVTSGIGPMIVKFTDLSTSSPDTWAWDFDNDGTADST
EQNPSYTYTSVGTYTVNLTVANANGTDSEVKTDYITVSEPSTPAEPVAAFTADVTAGTAP
LTVNFTDQSTGTPTSWIWEFGDGANSTEQKPSHTYNEAGNYTVNLTVKNSIGSNSTVKTN
YITVSSTPVEPEPVAAFIADVTSGTVPLIVNFMDQSTGSPTSWIWDFGDGTNATEQNPVH
TYTATGTYTVNLTVSNEDGNDSDIKTGYIKVSSQSSAKPVAAFTASPTSGKTPLNVAFTD
TSTGSPTSWFWNFGDGAKSFLQNPIHKYSKAGIYTVNLTVKNAKGKNTVTKTEYINVITK
PVANFNSSVTSGKAPLKVKFTDTSTGIPAKWRWDFGDGAKSFQQNPIHKYSKAGTYTVNL
TVKNAKGKNTVTKTEYIKVITKPVANFSANPTSGKAPLKVTFTDTSTGIPAKWRWDFGDG
SKSFHQNPIHKYSKAGTYTVNLTVKNVKGKNTVTKTEYIKIT
Download sequence
Identical sequences Q46B18
WP_011306970.1.36239 WP_011306970.1.74748 gi|73669489|ref|YP_305504.1| 269797.Mbar_A1990

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.