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  Home > Genomes > Cavia porcellus 69_3 > ENSCPOP00000001400

Domain assignment for ENSCPOP00000001400 from Cavia porcellus 69_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000001400
Domain Number 1 Region: 3185-3449
Classification Level Classification E-value
Superfamily YWTD domain 1.7e-51
Family YWTD domain 0.00000255
Further Details:      
 
Domain Number 2 Region: 381-642
Classification Level Classification E-value
Superfamily YWTD domain 5.75e-44
Family YWTD domain 0.00000949
Further Details:      
 
Domain Number 3 Region: 697-954
Classification Level Classification E-value
Superfamily YWTD domain 3.79e-43
Family YWTD domain 0.0000144
Further Details:      
 
Domain Number 4 Region: 1423-1683
Classification Level Classification E-value
Superfamily YWTD domain 5.23e-42
Family YWTD domain 0.00000781
Further Details:      
 
Domain Number 5 Region: 4042-4312
Classification Level Classification E-value
Superfamily YWTD domain 9.42e-37
Family YWTD domain 0.0000279
Further Details:      
 
Domain Number 6 Region: 2375-2626
Classification Level Classification E-value
Superfamily YWTD domain 3.14e-36
Family YWTD domain 0.00000883
Further Details:      
 
Domain Number 7 Region: 1732-1997
Classification Level Classification E-value
Superfamily YWTD domain 4.45e-36
Family YWTD domain 0.00014
Further Details:      
 
Domain Number 8 Region: 2053-2319
Classification Level Classification E-value
Superfamily YWTD domain 6.02e-35
Family YWTD domain 0.0000344
Further Details:      
 
Domain Number 9 Region: 277-370,635-690
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0000000000000104
Family Growth factor receptor domain 0.025
Further Details:      
 
Domain Number 10 Region: 1323-1415,1677-1725
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000000000118
Family Growth factor receptor domain 0.017
Further Details:      
 
Domain Number 11 Region: 2719-2761
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000000851
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 12 Region: 1249-1291
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000406
Family LDL receptor-like module 0.00075
Further Details:      
 
Domain Number 13 Region: 10-47
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000484
Family LDL receptor-like module 0.0007
Further Details:      
 
Domain Number 14 Region: 3130-3178
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000000067
Family EGF-type module 0.0078
Further Details:      
 
Domain Number 15 Region: 3613-3652
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000681
Family LDL receptor-like module 0.00054
Further Details:      
 
Domain Number 16 Region: 2971-3013
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000105
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 17 Region: 1090-1128
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000223
Family LDL receptor-like module 0.00099
Further Details:      
 
Domain Number 18 Region: 1132-1169
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000223
Family LDL receptor-like module 0.00086
Further Details:      
 
Domain Number 19 Region: 46-86
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000236
Family LDL receptor-like module 0.00058
Further Details:      
 
Domain Number 20 Region: 3739-3779
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000353
Family LDL receptor-like module 0.00094
Further Details:      
 
Domain Number 21 Region: 3496-3531
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000537
Family LDL receptor-like module 0.00098
Further Details:      
 
Domain Number 22 Region: 3056-3095
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000654
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 23 Region: 2887-2925
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000072
Family LDL receptor-like module 0.00054
Further Details:      
 
Domain Number 24 Region: 3704-3741
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000838
Family LDL receptor-like module 0.0009
Further Details:      
 
Domain Number 25 Region: 3783-3820
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000838
Family LDL receptor-like module 0.00097
Further Details:      
 
Domain Number 26 Region: 1050-1087
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000089
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 27 Region: 2684-2721
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000916
Family LDL receptor-like module 0.00091
Further Details:      
 
Domain Number 28 Region: 1006-1044
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000017
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 29 Region: 3571-3615
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.00089
Further Details:      
 
Domain Number 30 Region: 85-125
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000236
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 31 Region: 3013-3055
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000236
Family LDL receptor-like module 0.00096
Further Details:      
 
Domain Number 32 Region: 1691-1726,2006-2043,2628-2692
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000267
Family Growth factor receptor domain 0.02
Further Details:      
 
Domain Number 33 Region: 206-242
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000367
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 34 Region: 2842-2883
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000445
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 35 Region: 1170-1208
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000497
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 36 Region: 3912-3948
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000524
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 37 Region: 167-202
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000654
Family LDL receptor-like module 0.00082
Further Details:      
 
Domain Number 38 Region: 1214-1249
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000864
Family LDL receptor-like module 0.0007
Further Details:      
 
Domain Number 39 Region: 3532-3574
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000089
Family LDL receptor-like module 0.0016
Further Details:      
 
Domain Number 40 Region: 3826-3862
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000106
Family LDL receptor-like module 0.0019
Further Details:      
 
Domain Number 41 Region: 3096-3142
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000179
Family EGF-type module 0.0091
Further Details:      
 
Domain Number 42 Region: 2798-2844
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000236
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 43 Region: 2929-2972
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000432
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 44 Region: 3868-3906
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000118
Family LDL receptor-like module 0.0021
Further Details:      
 
Domain Number 45 Region: 1295-1331
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000223
Family LDL receptor-like module 0.0027
Further Details:      
 
Domain Number 46 Region: 2765-2803
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000445
Family LDL receptor-like module 0.0017
Further Details:      
 
Domain Number 47 Region: 255-285
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000615
Family LDL receptor-like module 0.0033
Further Details:      
 
Domain Number 48 Region: 132-165
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000995
Family LDL receptor-like module 0.0019
Further Details:      
 
Domain Number 49 Region: 3667-3700
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000017
Family LDL receptor-like module 0.0019
Further Details:      
 
Domain Number 50 Region: 3993-4026
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000051
Family EGF-type module 0.01
Further Details:      
 
Domain Number 51 Region: 3955-3994
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00002
Family EGF-type module 0.0094
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000001400
Domain Number - Region: 4367-4398
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000327
Family EGF-type module 0.025
Further Details:      
 
Domain Number - Region: 2326-2370
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000403
Family EGF-type module 0.018
Further Details:      
 
Domain Number - Region: 3454-3515
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0142
Family EGF-type module 0.02
Further Details:      
 
Domain Number - Region: 4318-4397
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0251
Family Growth factor receptor domain 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000001400   Gene: ENSCPOG00000001548   Transcript: ENSCPOT00000001568
Sequence length 4639
Comment pep:known scaffold:cavPor3:scaffold_3:20009466:20156209:1 gene:ENSCPOG00000001548 transcript:ENSCPOT00000001568 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
LLLFFCLMGITGCNADQFRCGNGYCIPAHWRCDGTRDCIDDTDEAGCPPRSCSASLFQCH
DGECISRLWVCDNEEDCDDGSDEHNCPGRTCSSDQLTCSSGQCVPRAYRCDHVQDCQDGT
DERDCQIDYPVCEQLTCANGACYNTSQKCDSKMDCRDSSDEVNCTETCMHDEFQCGTGEC
VPRGYLCDHDQDCNDGSDEHNCKYETCSGNQFTCPGGQCIHQNWVCDGQDDCPDFGDEDG
CGKGVADVHWGSVESWSCPNSGQCISIYQVCDGVPDCPRGADENSTSNESHCGTSLCSVL
NCEFQCHKTPYGGSCFCPPGYVINQNDSRTCVAFDDCQIWGICDQKCENRMGHHRCGCEE
GYVLERERHCRANTSFNEASVIFSNGRDLVIGDIHGRSFQILVHSQNRGLALGVDFHYQE
HKVFWTSFMENKVFSVDLNSLRIQEILNVSIEAPENMAVDWVNNKLYIVETRIKRIDMMN
LDGSHRITLIAENLGHPRGIAVDPTIGYLFFSDWRSLSGEPKLERAFMDGSNRKDLVKTK
LGWPAGVTLDLMAKRVYWVDSRFDCIETVTYDGIQRKTVLHGGSLIPHPFGISLFEENVF
YTDWTKMAVMKANKFEDTHPQTYYQSTLRPYGVTVYHALRQPNVSNPCGDHNGGCEQVCV
LSHRTDNGGLGYRCKCSFGFELDADEHHCRVLKSFLLFSSELAVRGIPFTHSTQEDVILP
VTRSTSFYLGIDFDAHENAIFFSDTSQDIIYKQKIDGTGREILTANRVENVESLTFDWIS
KNLYWTDGSLKSVSVMKLADKSRRAIVQNLNNPRAIVVHPIAGYIFFSDWFRPAKIMRAW
ADGSHLVPIVNTTLGWPNGLAIDWEASRLYWVDAFFDKIEHSTFDGFDRRRLGHVEQMTH
PFGLTVFKDHVYFTDWRLGAIVQVRKLDGGDMRIIRSGITNVMHVKAYDANLQTGTNYCS
QPTHPNGDCSHFCFPVPNFQRVCGCYGMKLASNHMTCEGDPAHEPPTEQCGSFSFACNNG
KCVPSFFRCDGIDDCHDNSDEHQCGTSNNTCSPWAFTCVHGGECIPGHWRCDRHNDCVDG
SDEQNCPTRPPTTCPESSYACDNNRCIPRDWLCDTDNDCGDGSDEKNCNSSSTCRPNQFH
CPDHRCIDPTYVCDGDKDCADGSDEAGCIYNCTTYQFKCADGSRCINNRYRCDGVYDCSD
NSDEAGCPTRPPGMCHTDEFQCQGDGTCIPNTWECDGHPDCIHGSDEHHGCVPKTCLSSQ
FHCDNGNCIYKEWVCDGDNDCRDMSDEKDCPTQPFHCPSWQWQCPGYAICVNLSAVCDGV
FDCPNGTDESPLCNEDSCSHFNGGCTHQCIQGPFGVTCLCPSGYQLANDTKTCEDINECD
TPGFCSQLCYNLRGSFRCTCDSDYNLEDDGRTCKATASENLLLLVASQNKIIADNITSHV
HNIFSLVENGSYVIALDFDSVSNRIFWSDSVQGKTWSAFQNGTDWRIIHESGVSITEAIA
VDWIGRNLYWIDYALETIEVSKIDGSHRMVLISKNVTNPRGLALDPRINEHIMFWSDWGR
HPRIERASMDGTLRTVIIQEKIYWPCGLTIDLPNRLIYFMDAYLDYLDFCDYNGQHRRQV
IAGNLNVLHPYALTLFEESVFWTDRATRQVMEANKWHGANQSVVMYNVPRPLGIVAVHPA
KQPRSPNPCASVPCSHLCLLSSQGPRFYSCACPSGWNLSHDSMSCVRGDQPFLMTVRMHV
IFGISLDPEVKSNDAMVPIAGIQSGFDVEFDEVEQFIYWVENPGEIHRVKTDGTNRTVFA
PLSLLGSSMGLAFDWISRNMYYTTPASQSIEVLTLRGETRYRKTLITNDGTNLGVGFPVG
IAVDPARGKLYWSDQGTDSGIPAKIASANMDGTSSKILFTGNMDHLEIVTLDIKEQKLYW
AVTSRGVIERGNVDGTERMILVYHLSHPWGIAVHDSFLYYSDEQYEVIERVDKASGANKV
VMRDNVPNLRGLRVYHRRNVGESSNGCSNNVNTCQQICLPVPGGLFSCACATGFKLNPDH
QTCSPYKSFIVVSMLSAIRGFSLEVSDHSEAMVPVAGQGRNALHVDVDVASGFIYWCDFS
SSVTSYNAIRRIRPDGSSFTNIVTSGIGGNGIRGIAVDWVAGNLYFTNGFATETLIEVLR
INTTYRRVLLKVTVDMPRHIVVDPKNRYLFWADYGQKPKIERSFLDCTNRTILVSEGIVT
PRGLAVDHSSGYIYWVDDSLDIIARIHRNGGESEVVRYGSHYPTPFGITVFGNSIIWVDR
NLKKIFQASKEPDNTDAPTVIRDNIYWLRDVTIFDESVQPRLPAEVDNNPCLENNGGCSH
FCFALPALNTPKCGCAFGTLQSDAKSCAISTENFLVYTSESSLRSLHFDLEDHNPPFQAI
SVERPAIALDYDTVDNRLYFTQALDSGRGQISYISLYSRTHTPTVIVSDIGTSNGIAFDW
INRRIYYSDYVNETINSIAEDGSMRTVVARISKPRSIVLDPCHGYMYWSNWDTPAQIEKA
TLGGNFRVPIVNTSLVWPSGLTLDYDLNLLYWVDTSLQKIERISVTGMNREVIISSAFRS
FGLTLYGQYIYWTNFFTKKVYRANKYDGSGQIAMTTTLPVRPKDICVARKDQNQHCTNPC
DQINGGCSHICVPGPNGAECVCPHEGQWYLANDNKFCVVDTGARCEHSQFTCLNGHCIQE
AWICDQDNDCGDGSDELEIVCAFHTCPPTTFTCANGRCVRYSYRCDHYNDCGDNSDEQGC
LFRSCNDTTEFTCSNGRCIPLEYVCNGVNNCHDNSTSDERNCPERTCPSGYTKCPNTNIC
ISRLYLCDGDNDCGDMSDENPTYCSTHTCSSSEFQCVSPQRCIPRSWYCDEEADCSDGSD
EPSTCTHAERTCLSNEFKCDGGRCIPRDWICDGDNDCGDMSDEDERHHCEQHTCSSSEFH
CANSVPPGRQCIPRSWVCDGDADCADAFDEHQNCTRRSCSAGEFTCNNGLCILQSYRCDR
RNDCGDYSDERDCSYPTCREYQFTCQNGRCINKLFVCDHDNDCGDESDEQEHLCHALQPT
CPPHQFKCDNGHCIEMVKVCNHLDDCSDNSDEKGCGINECLDHSISGCDHNCTDTVTSFY
CSCRPGYKLMSDKKTCVDIDECKETPYVCSQKCENEIGSYICKCAPGYIREPDGKTCRQN
SDIEPYLIFSNRYYLRNLTVDGYSYSLILQGLGNAVALDFDRVEKRLYWIDVQRQVIERM
FLNQTHREIIMSHRLPASKGLAVDWVSRKLYWVDAQLDGIFVSDLQGQYRRMLAQHCMDA
NNTFCFDNPRGIVVHPQYGYVYWTDWGEHAYIARVGMDGANKSVIISTKLSWPNAITIDY
TNDFLYWADAHLGYIEYSDLEGHHRHTVYDGVLPHPYAITVFEDTIYWTDWNTRTVEKGN
KYNGSNRVVLVNTTHRPFDIHVYHPYRQPIVNNPCGTNNGGCSHLCLIKAGGNGFTCECP
DDFQTLRLSGRTLCLPMCSSTQFLCANNEKCIPIWWKCDGQKDCSDGSDEPALCPHRFCQ
LGQFQCRDGNCTSPQSLCNGQQNCHDGSDEDHALCENHRCEPYQWQCANKQCIPDSWQCD
SVNDCLDNSDEDRAHCASRTCRPGQFRCNNGRCIPQTWKCDVDNDCGDYSDEPIHECMSA
AHRCDNHTDFSCKTNYRCVPLWTVCNGVDDCRDNSDEQGCEARTCHPSGDFRCKNHKCIP
LRWKCDGEDDCGDSSDEENCAPRECTESEFRCTNQQCIPSRWVCDQENDCGDNSDERDCE
LRTCHPEHFQCTSGHCIPSGFQCDGRADCLDASDESTCPTRFPNGTYCPAALFECKNHVC
VQSYFVCDGEDDCGDGSDEALHLCFSVACEPPQRFRCDNSRCLYAQRVCNGVDDCGDGTD
EKEEHCRKPTPKPCTENEFKCSNGNCISQLNICDDVDDCGDLSDETGCNIGKDRTCAENL
CEHNCTQLSEGGFICSCRSGYKAGTSDRNSCQDINECEGFGVCPQNCRNTKGSYECFCAD
GFRSLSTHYGERCAADGNPPLLLLPENVRIRKYNVSSEKFSEYLEDEEHIQTIDYDWDPE
GTGLSVVYYTVLAQSPRFGAIKRAYIPNFESGRNNPTHEVDLGLNYVMQPDGLAVDWVGR
HVYWSDAKNQRVEVARLDGRYRKWLVTTQLDQPTAIVVNPKLGLMFWSDQGKEPKIESAW
MNGEHRSVLVSENLGWPNGLSIDYLNNDRIYWSDSKEDVIETIKYDGSDRRVIVKEAMKP
YSLDIFEDKLYWVSKEKGEVWMQNKFGQGMKEKVLVVNPWLTQVRIFHQHRYNLSVSNPC
KDVCSHLCLLRPGGYSCACPQGSSFIKGSITECDAAIELPITMPPPCRCMYGGSCYFDEN
EYPKCKCVSGYTGAYCEIGLSQGIPPGTTAMAVLLTVLLIIILGALGAVGFFHYRKTGTL
LPALPKLPSLSSLVKPSENGNGVTFRSGVDVNMDIGVSDFGPESAIDRSMAMSEHFAMEM
GKEPVIFENPMYSARGTVVKVVLPAKVTVSENVENKNYGSPVNPSEIVPELKPTSPDVDG
TQATKWSIFKRKPKQTTNFENPIYAEMDNEQKEYVAAAPPPSPSPPAKTSQTRDPSLGYT
ATEDTFKDTANLVKEDSEA
Download sequence
Identical sequences ENSCPOP00000001400 ENSCPOP00000001400 10141.ENSCPOP00000001400

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.