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  Home > Genomes > Cavia porcellus 69_3 > ENSCPOP00000004385

Domain assignment for ENSCPOP00000004385 from Cavia porcellus 69_3

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSCPOP00000004385
Domain Number 1 Region: 490-559
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000000188
Family VWC domain 0.0046
Further Details:      
 
Domain Number 2 Region: 1116-1188
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000000009
Family VWC domain 0.014
Further Details:      
 
Domain Number 3 Region: 142-204
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000115
Family VWC domain 0.0034
Further Details:      
 
Domain Number 4 Region: 317-382
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000000241
Family VWC domain 0.0085
Further Details:      
 
Domain Number 5 Region: 872-939
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000000691
Family VWC domain 0.018
Further Details:      
 
Domain Number 6 Region: 204-263
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000188
Family VWC domain 0.019
Further Details:      
 
Domain Number 7 Region: 753-819
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000387
Family VWC domain 0.0084
Further Details:      
 
Domain Number 8 Region: 930-996
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000000429
Family VWC domain 0.0057
Further Details:      
 
Domain Number 9 Region: 265-324
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000126
Family VWC domain 0.022
Further Details:      
 
Domain Number 10 Region: 435-498
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000523
Family VWC domain 0.0042
Further Details:      
 
Domain Number 11 Region: 988-1064
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000000795
Family VWC domain 0.016
Further Details:      
 
Domain Number 12 Region: 375-429
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000429
Family Fibronectin type I module 0.061
Further Details:      
 
Domain Number 13 Region: 549-610
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000000691
Family VWC domain 0.039
Further Details:      
 
Domain Number 14 Region: 703-749
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000126
Family Fibronectin type I module 0.057
Further Details:      
 
Domain Number 15 Region: 608-664
Classification Level Classification E-value
Superfamily FnI-like domain 0.0000000136
Family VWC domain 0.024
Further Details:      
 
Domain Number 16 Region: 1457-1522
Classification Level Classification E-value
Superfamily Serine protease inhibitors 0.0000000229
Family ATI-like 0.041
Further Details:      
 
Domain Number 17 Region: 812-869
Classification Level Classification E-value
Superfamily FnI-like domain 0.000000046
Family Fibronectin type I module 0.054
Further Details:      
 
Domain Number 18 Region: 1076-1123
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000157
Family VWC domain 0.01
Further Details:      
 
Domain Number 19 Region: 98-139
Classification Level Classification E-value
Superfamily FnI-like domain 0.00000827
Family VWC domain 0.032
Further Details:      
 
Weak hits

Sequence:  ENSCPOP00000004385
Domain Number - Region: 62-95
Classification Level Classification E-value
Superfamily Mitotic arrest deficient-like 1, Mad1 0.051
Family Mitotic arrest deficient-like 1, Mad1 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCPOP00000004385   Gene: ENSCPOG00000025035   Transcript: ENSCPOT00000004924
Sequence length 1529
Comment pep:novel scaffold:cavPor3:scaffold_11:49350728:49372408:-1 gene:ENSCPOG00000025035 transcript:ENSCPOT00000004924 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MAELGGAPLFLLLHLCSLALAAGRVAGGGTVLREPPGLADIHNYQHETPAHSSVAVGSPQ
KQWHPLEERLGRLEAEVTKLREQNKELQARVRQLESCECRPTSAQCWGLGRTWPEGARWE
PDACTACICQNGVARCGPQPDLPHCQGCSHNGQVYGDGEAFSPDACITCRCLAGTVQCQG
PSCSKLNCLESYTPPGECCPVCRPGCEYEGQLYEEGASFLSISNPCLQCSCLRSLVRCVP
VKCPPSPCPKPVQRPGHCCPVCQVPGCTEDGIHRDHGQEWTAPGDPCQICQCLEGRIQCH
QRECASLCPYPARPLPGTCCPVCDGCFLNGREHRSGEPVGSGDPCLRCHCANGSVQCEPL
PCPPVPCRHPGRISGQCCPVCDGCEYQGLQYQSQETFRLQESGLCVRCSCQAGEVSCEEQ
ECPVTPCAPSGSGPRLCPACVLDGEEFAEGVQWEPDGQPCTTCSCQDGVPICGPVLCSPP
PCQHPTQLPGACCPSCESCTYHGHPYASGQNFTDTEDPCQACHCKDGTVRCSVINCPPTT
CARPQSQPGQCCPRCPDCILEKQVFIDGQRFSHPGDPCQECHCQEGLARCQPRPCPRAPC
AHPLPGTCCQSDCSGCAFGGKEYPSGADFPHPSDPCRLCLCLSGSVQCLARRCPPLRCPE
PALPQGRGVRRVAEQTLHLVHARGTPGDPGPRPRAASPLLASAGCRYHGKEFASGERFPE
PGAACHECLCWEGTVTCEPRPCAPAQCPFPARGDCCPACDGCEYLGESYLSSQDFPDPQE
PCNVCTCLGGFVTCSRRPCEPPGCIHALTPLGHCCPVCQGCFYHGVTAAPGETLPDPLDP
TCSLCTCQEGSMRCQRRPCRPAPCPHPSPGPCFCPVCRSCHFRGQEHQDGKEFEGPAGSC
ERCRCQAGQVSCARLQCPPLPCLHQVTEPGSCCPRCRGCLAHGEEHPEGSSWVLPDSPCS
SCMCHEGIVTCAHIQCVSSCAQPHLEPGDCCPRCSGCEHEGRKYEAGESFQPGADPCEVC
ICEPQPEGPPSLRCHRRQCPSLVGCPPSQLLLPEPQHCCPTCAQALSNCTESLLGSELAP
TDPCYTCRCQDLTWLCIRRTCPELSCPPLEHHTPPGSCCPVCQASTQSCEHQGRQVASGE
HWTVDVCTNCSCMAGTVHCHSQHCPPPSCSSNEAPALSPGSCCPRCLPRPASCMAFGDPH
YRTFDGRLLHFQGSCSYVLVKDCHGGDFSVHVTNDDRGRSGVAWTQEVAVLLGDVAVQLL
QGRTVLVDQRPVALPFLQEPLLYVELWGQTVILHAWLGLQVLWDGRSQVEVRVPGSYRGH
TCGLCGNFNGFAQDDLQGPNGLLLPTEAAFGNSWQVPDGPESGQPCSAGREVDPCRAAGY
RARREANVRCGQLKSSSFSRCHAVVPPEPFFAACVYDLCACGPGPSADACLCDALQAYAS
HCRQAGVTPVWRGPTLCVVGCPLDRGFVFDECGPPCPRTCFNQHIPLEELAAHCVRPCVP
GCQCPAGLVEHEGHCIPPDACPPVLFTGA
Download sequence
Identical sequences ENSCPOP00000004385 ENSCPOP00000004385 10141.ENSCPOP00000004385

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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